Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00785 and ABZR87_RS00790 are separated by 62 nucleotides ABZR87_RS00790 and ABZR87_RS00795 overlap by 4 nucleotides ABZR87_RS00795 and ABZR87_RS00800 are separated by 20 nucleotides
ABZR87_RS00785: ABZR87_RS00785 - tripartite tricarboxylate transporter substrate binding protein BugE, at 158,064 to 159,023
_RS00785
ABZR87_RS00790: ABZR87_RS00790 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 159,086 to 159,562
_RS00790
ABZR87_RS00795: ABZR87_RS00795 - site-specific tyrosine recombinase XerD, at 159,559 to 160,494
_RS00795
ABZR87_RS00800: ABZR87_RS00800 - Cys-tRNA(Pro) deacylase, at 160,515 to 161,006
_RS00800
Position (kb) 159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.129 kb on + strand at 158.307 kb on + strand, within ABZR87_RS00785 at 158.307 kb on + strand, within ABZR87_RS00785 at 158.373 kb on + strand, within ABZR87_RS00785 at 158.374 kb on - strand, within ABZR87_RS00785 at 158.463 kb on + strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.505 kb on + strand, within ABZR87_RS00785 at 158.505 kb on + strand, within ABZR87_RS00785 at 158.506 kb on - strand, within ABZR87_RS00785 at 158.802 kb on + strand, within ABZR87_RS00785 at 158.802 kb on + strand, within ABZR87_RS00785 at 158.803 kb on - strand, within ABZR87_RS00785 at 158.803 kb on - strand, within ABZR87_RS00785 at 158.934 kb on - strand at 158.934 kb on - strand at 158.934 kb on - strand at 158.946 kb on + strand at 158.946 kb on + strand at 158.947 kb on - strand at 159.021 kb on + strand at 159.048 kb on + strand at 159.049 kb on - strand at 159.049 kb on - strand at 159.173 kb on + strand, within ABZR87_RS00790 at 159.174 kb on - strand, within ABZR87_RS00790 at 159.248 kb on + strand, within ABZR87_RS00790 at 159.248 kb on + strand, within ABZR87_RS00790 at 159.249 kb on - strand, within ABZR87_RS00790 at 159.251 kb on + strand, within ABZR87_RS00790 at 159.251 kb on + strand, within ABZR87_RS00790 at 159.251 kb on + strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.319 kb on - strand, within ABZR87_RS00790 at 159.319 kb on - strand, within ABZR87_RS00790 at 159.362 kb on + strand, within ABZR87_RS00790 at 159.362 kb on + strand, within ABZR87_RS00790 at 159.363 kb on - strand, within ABZR87_RS00790 at 159.363 kb on - strand, within ABZR87_RS00790 at 159.506 kb on + strand, within ABZR87_RS00790 at 159.507 kb on - strand, within ABZR87_RS00790 at 159.507 kb on - strand, within ABZR87_RS00790 at 159.558 kb on + strand at 159.558 kb on + strand at 159.558 kb on + strand at 159.559 kb on - strand at 159.673 kb on - strand, within ABZR87_RS00795 at 159.707 kb on - strand, within ABZR87_RS00795 at 159.772 kb on + strand, within ABZR87_RS00795 at 159.772 kb on + strand, within ABZR87_RS00795 at 159.826 kb on - strand, within ABZR87_RS00795 at 160.025 kb on - strand, within ABZR87_RS00795 at 160.025 kb on - strand, within ABZR87_RS00795 at 160.025 kb on - strand, within ABZR87_RS00795 at 160.273 kb on + strand, within ABZR87_RS00795 at 160.273 kb on + strand, within ABZR87_RS00795 at 160.274 kb on - strand, within ABZR87_RS00795 at 160.274 kb on - strand, within ABZR87_RS00795 at 160.288 kb on + strand, within ABZR87_RS00795 at 160.289 kb on - strand, within ABZR87_RS00795 at 160.432 kb on + strand at 160.432 kb on + strand at 160.433 kb on - strand at 160.433 kb on - strand at 160.433 kb on - strand at 160.433 kb on - strand at 160.433 kb on - strand at 160.501 kb on + strand at 160.502 kb on - strand at 160.502 kb on - strand at 160.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 158,124 + -0.3 158,124 + -0.2 158,124 + +1.5 158,124 + +0.4 158,124 + -0.1 158,124 + +0.4 158,124 + -0.6 158,124 + +0.6 158,125 - +0.1 158,125 - +0.2 158,125 - +0.4 158,125 - +0.5 158,125 - -0.3 158,129 + +1.3 158,307 + ABZR87_RS00785 0.25 -1.3 158,307 + ABZR87_RS00785 0.25 -2.4 158,373 + ABZR87_RS00785 0.32 +0.1 158,374 - ABZR87_RS00785 0.32 +0.1 158,463 + ABZR87_RS00785 0.42 +1.2 158,464 - ABZR87_RS00785 0.42 -0.5 158,464 - ABZR87_RS00785 0.42 +0.6 158,464 - ABZR87_RS00785 0.42 -0.5 158,505 + ABZR87_RS00785 0.46 -0.5 158,505 + ABZR87_RS00785 0.46 +0.4 158,506 - ABZR87_RS00785 0.46 -0.4 158,802 + ABZR87_RS00785 0.77 +0.1 158,802 + ABZR87_RS00785 0.77 -0.8 158,803 - ABZR87_RS00785 0.77 +1.1 158,803 - ABZR87_RS00785 0.77 -0.3 158,934 - -0.8 158,934 - +2.0 158,934 - -1.5 158,946 + -2.6 158,946 + +0.3 158,947 - -0.4 159,021 + -0.6 159,048 + +0.4 159,049 - -0.0 159,049 - +0.3 159,173 + ABZR87_RS00790 0.18 +2.6 159,174 - ABZR87_RS00790 0.18 -0.5 159,248 + ABZR87_RS00790 0.34 -1.3 159,248 + ABZR87_RS00790 0.34 -1.3 159,249 - ABZR87_RS00790 0.34 +0.4 159,251 + ABZR87_RS00790 0.35 +0.1 159,251 + ABZR87_RS00790 0.35 -0.0 159,251 + ABZR87_RS00790 0.35 -0.8 159,252 - ABZR87_RS00790 0.35 -0.4 159,252 - ABZR87_RS00790 0.35 +0.7 159,252 - ABZR87_RS00790 0.35 -1.5 159,252 - ABZR87_RS00790 0.35 -0.2 159,252 - ABZR87_RS00790 0.35 +0.2 159,319 - ABZR87_RS00790 0.49 -0.6 159,319 - ABZR87_RS00790 0.49 +1.0 159,362 + ABZR87_RS00790 0.58 -1.9 159,362 + ABZR87_RS00790 0.58 +2.7 159,363 - ABZR87_RS00790 0.58 +0.7 159,363 - ABZR87_RS00790 0.58 -0.4 159,506 + ABZR87_RS00790 0.88 -0.1 159,507 - ABZR87_RS00790 0.88 +0.8 159,507 - ABZR87_RS00790 0.88 +0.4 159,558 + +0.6 159,558 + +0.3 159,558 + +1.2 159,559 - +0.7 159,673 - ABZR87_RS00795 0.12 +0.7 159,707 - ABZR87_RS00795 0.16 +1.3 159,772 + ABZR87_RS00795 0.23 -0.4 159,772 + ABZR87_RS00795 0.23 +0.0 159,826 - ABZR87_RS00795 0.29 -0.3 160,025 - ABZR87_RS00795 0.50 +0.5 160,025 - ABZR87_RS00795 0.50 +0.2 160,025 - ABZR87_RS00795 0.50 -2.2 160,273 + ABZR87_RS00795 0.76 -1.3 160,273 + ABZR87_RS00795 0.76 +0.2 160,274 - ABZR87_RS00795 0.76 +0.3 160,274 - ABZR87_RS00795 0.76 -1.7 160,288 + ABZR87_RS00795 0.78 -0.4 160,289 - ABZR87_RS00795 0.78 +0.0 160,432 + +1.3 160,432 + -1.3 160,433 - -1.3 160,433 - +0.7 160,433 - -0.9 160,433 - +2.5 160,433 - +0.3 160,501 + +0.1 160,502 - -2.2 160,502 - -0.3 160,515 - +0.9
Or see this region's nucleotide sequence