Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00535

Experiment: root EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00530 and ABZR87_RS00535 are separated by 127 nucleotidesABZR87_RS00535 and ABZR87_RS00540 are separated by 8 nucleotidesABZR87_RS00540 and ABZR87_RS00545 are separated by 16 nucleotides ABZR87_RS00530: ABZR87_RS00530 - MFS transporter, at 109,535 to 110,851 _RS00530 ABZR87_RS00535: ABZR87_RS00535 - hypothetical protein, at 110,979 to 111,326 _RS00535 ABZR87_RS00540: ABZR87_RS00540 - 4-hydroxy-tetrahydrodipicolinate synthase, at 111,335 to 112,219 _RS00540 ABZR87_RS00545: ABZR87_RS00545 - hypothetical protein, at 112,236 to 112,829 _RS00545 Position (kb) 110 111 112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 110.018 kb on + strand, within ABZR87_RS00530at 110.021 kb on + strand, within ABZR87_RS00530at 110.021 kb on + strand, within ABZR87_RS00530at 110.021 kb on + strand, within ABZR87_RS00530at 110.050 kb on + strand, within ABZR87_RS00530at 110.050 kb on + strand, within ABZR87_RS00530at 110.050 kb on + strand, within ABZR87_RS00530at 110.051 kb on - strand, within ABZR87_RS00530at 110.051 kb on - strand, within ABZR87_RS00530at 110.051 kb on - strand, within ABZR87_RS00530at 110.051 kb on - strand, within ABZR87_RS00530at 110.051 kb on - strand, within ABZR87_RS00530at 110.177 kb on + strand, within ABZR87_RS00530at 110.177 kb on + strand, within ABZR87_RS00530at 110.178 kb on - strand, within ABZR87_RS00530at 110.178 kb on - strand, within ABZR87_RS00530at 110.178 kb on - strand, within ABZR87_RS00530at 110.321 kb on + strand, within ABZR87_RS00530at 110.321 kb on + strand, within ABZR87_RS00530at 110.322 kb on - strand, within ABZR87_RS00530at 110.322 kb on - strand, within ABZR87_RS00530at 110.322 kb on - strand, within ABZR87_RS00530at 110.322 kb on - strand, within ABZR87_RS00530at 110.336 kb on + strand, within ABZR87_RS00530at 110.336 kb on + strand, within ABZR87_RS00530at 110.336 kb on + strand, within ABZR87_RS00530at 110.337 kb on - strand, within ABZR87_RS00530at 110.337 kb on - strand, within ABZR87_RS00530at 110.337 kb on - strand, within ABZR87_RS00530at 110.349 kb on - strand, within ABZR87_RS00530at 110.349 kb on - strand, within ABZR87_RS00530at 110.349 kb on - strand, within ABZR87_RS00530at 110.349 kb on - strand, within ABZR87_RS00530at 110.482 kb on + strand, within ABZR87_RS00530at 110.482 kb on + strand, within ABZR87_RS00530at 110.600 kb on + strand, within ABZR87_RS00530at 110.600 kb on + strand, within ABZR87_RS00530at 110.601 kb on - strand, within ABZR87_RS00530at 110.601 kb on - strand, within ABZR87_RS00530at 110.601 kb on - strand, within ABZR87_RS00530at 110.765 kb on + strandat 110.766 kb on - strandat 110.766 kb on - strandat 110.768 kb on + strandat 110.769 kb on - strandat 110.769 kb on - strandat 110.769 kb on - strandat 110.769 kb on - strandat 110.769 kb on - strandat 110.769 kb on - strandat 110.857 kb on + strandat 110.857 kb on + strandat 110.857 kb on + strandat 110.858 kb on - strandat 110.858 kb on - strandat 110.868 kb on + strandat 110.869 kb on - strandat 110.869 kb on - strandat 110.869 kb on - strandat 110.869 kb on - strandat 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.153 kb on + strand, within ABZR87_RS00535at 111.153 kb on + strand, within ABZR87_RS00535at 111.153 kb on + strand, within ABZR87_RS00535at 111.153 kb on + strand, within ABZR87_RS00535at 111.153 kb on + strand, within ABZR87_RS00535at 111.153 kb on + strand, within ABZR87_RS00535at 111.154 kb on - strand, within ABZR87_RS00535at 111.154 kb on - strand, within ABZR87_RS00535at 111.154 kb on - strand, within ABZR87_RS00535at 111.154 kb on - strand, within ABZR87_RS00535at 111.154 kb on - strand, within ABZR87_RS00535at 111.501 kb on - strand, within ABZR87_RS00540at 111.501 kb on - strand, within ABZR87_RS00540at 111.605 kb on + strand, within ABZR87_RS00540at 111.605 kb on + strand, within ABZR87_RS00540at 111.606 kb on - strand, within ABZR87_RS00540at 111.606 kb on - strand, within ABZR87_RS00540at 111.630 kb on - strand, within ABZR87_RS00540at 111.647 kb on + strand, within ABZR87_RS00540at 111.647 kb on + strand, within ABZR87_RS00540at 111.648 kb on - strand, within ABZR87_RS00540at 111.648 kb on - strand, within ABZR87_RS00540at 111.648 kb on - strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.686 kb on + strand, within ABZR87_RS00540at 111.687 kb on - strand, within ABZR87_RS00540at 111.728 kb on + strand, within ABZR87_RS00540at 111.729 kb on - strand, within ABZR87_RS00540at 111.729 kb on - strand, within ABZR87_RS00540at 112.206 kb on + strandat 112.218 kb on - strandat 112.218 kb on - strandat 112.218 kb on - strandat 112.249 kb on + strandat 112.249 kb on + strandat 112.249 kb on + strandat 112.249 kb on + strandat 112.249 kb on + strandat 112.250 kb on - strandat 112.250 kb on - strandat 112.250 kb on - strandat 112.283 kb on + strandat 112.283 kb on + strandat 112.283 kb on + strandat 112.283 kb on + strandat 112.284 kb on - strandat 112.284 kb on - strandat 112.284 kb on - strandat 112.284 kb on - strandat 112.285 kb on + strandat 112.285 kb on + strandat 112.285 kb on + strandat 112.286 kb on - strandat 112.286 kb on - strandat 112.286 kb on - strandat 112.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB
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110,018 + ABZR87_RS00530 0.37 +0.1
110,021 + ABZR87_RS00530 0.37 -0.6
110,021 + ABZR87_RS00530 0.37 -3.1
110,021 + ABZR87_RS00530 0.37 +1.5
110,050 + ABZR87_RS00530 0.39 +0.2
110,050 + ABZR87_RS00530 0.39 +0.7
110,050 + ABZR87_RS00530 0.39 -3.1
110,051 - ABZR87_RS00530 0.39 +0.1
110,051 - ABZR87_RS00530 0.39 -0.9
110,051 - ABZR87_RS00530 0.39 -2.2
110,051 - ABZR87_RS00530 0.39 +0.5
110,051 - ABZR87_RS00530 0.39 -1.1
110,177 + ABZR87_RS00530 0.49 -0.2
110,177 + ABZR87_RS00530 0.49 +0.7
110,178 - ABZR87_RS00530 0.49 +0.6
110,178 - ABZR87_RS00530 0.49 +0.3
110,178 - ABZR87_RS00530 0.49 +0.2
110,321 + ABZR87_RS00530 0.60 -0.4
110,321 + ABZR87_RS00530 0.60 -0.8
110,322 - ABZR87_RS00530 0.60 +0.0
110,322 - ABZR87_RS00530 0.60 +1.1
110,322 - ABZR87_RS00530 0.60 +1.0
110,322 - ABZR87_RS00530 0.60 -0.3
110,336 + ABZR87_RS00530 0.61 -0.0
110,336 + ABZR87_RS00530 0.61 +0.7
110,336 + ABZR87_RS00530 0.61 +0.3
110,337 - ABZR87_RS00530 0.61 +0.9
110,337 - ABZR87_RS00530 0.61 +0.8
110,337 - ABZR87_RS00530 0.61 +0.9
110,349 - ABZR87_RS00530 0.62 -0.3
110,349 - ABZR87_RS00530 0.62 -0.3
110,349 - ABZR87_RS00530 0.62 -0.1
110,349 - ABZR87_RS00530 0.62 +0.2
110,482 + ABZR87_RS00530 0.72 +0.2
110,482 + ABZR87_RS00530 0.72 -0.7
110,600 + ABZR87_RS00530 0.81 +0.4
110,600 + ABZR87_RS00530 0.81 -0.5
110,601 - ABZR87_RS00530 0.81 +0.6
110,601 - ABZR87_RS00530 0.81 -0.9
110,601 - ABZR87_RS00530 0.81 +0.1
110,765 + +0.0
110,766 - -0.4
110,766 - -1.8
110,768 + -1.1
110,769 - -1.1
110,769 - +0.9
110,769 - +0.7
110,769 - -0.3
110,769 - +0.8
110,769 - -0.4
110,857 + -1.1
110,857 + -1.4
110,857 + +0.3
110,858 - +0.0
110,858 - -1.2
110,868 + -0.5
110,869 - +1.0
110,869 - +1.8
110,869 - -0.7
110,869 - +1.2
111,063 + ABZR87_RS00535 0.24 -0.3
111,063 + ABZR87_RS00535 0.24 -1.3
111,063 + ABZR87_RS00535 0.24 -0.3
111,063 + ABZR87_RS00535 0.24 -0.4
111,063 + ABZR87_RS00535 0.24 -0.7
111,063 + ABZR87_RS00535 0.24 +0.6
111,063 + ABZR87_RS00535 0.24 -0.5
111,063 + ABZR87_RS00535 0.24 -0.1
111,064 - ABZR87_RS00535 0.24 -0.6
111,064 - ABZR87_RS00535 0.24 -0.0
111,064 - ABZR87_RS00535 0.24 +0.2
111,064 - ABZR87_RS00535 0.24 +0.7
111,064 - ABZR87_RS00535 0.24 +0.9
111,064 - ABZR87_RS00535 0.24 +0.0
111,064 - ABZR87_RS00535 0.24 +0.4
111,064 - ABZR87_RS00535 0.24 +1.3
111,064 - ABZR87_RS00535 0.24 +0.8
111,153 + ABZR87_RS00535 0.50 +1.9
111,153 + ABZR87_RS00535 0.50 +0.5
111,153 + ABZR87_RS00535 0.50 -1.4
111,153 + ABZR87_RS00535 0.50 +0.9
111,153 + ABZR87_RS00535 0.50 +0.4
111,153 + ABZR87_RS00535 0.50 -0.4
111,154 - ABZR87_RS00535 0.50 -0.3
111,154 - ABZR87_RS00535 0.50 -2.5
111,154 - ABZR87_RS00535 0.50 +2.5
111,154 - ABZR87_RS00535 0.50 +0.2
111,154 - ABZR87_RS00535 0.50 +0.3
111,501 - ABZR87_RS00540 0.19 +0.6
111,501 - ABZR87_RS00540 0.19 -1.1
111,605 + ABZR87_RS00540 0.31 +1.4
111,605 + ABZR87_RS00540 0.31 -0.1
111,606 - ABZR87_RS00540 0.31 +0.7
111,606 - ABZR87_RS00540 0.31 -0.2
111,630 - ABZR87_RS00540 0.33 -1.3
111,647 + ABZR87_RS00540 0.35 -0.5
111,647 + ABZR87_RS00540 0.35 +0.8
111,648 - ABZR87_RS00540 0.35 -0.5
111,648 - ABZR87_RS00540 0.35 -2.1
111,648 - ABZR87_RS00540 0.35 -1.3
111,650 + ABZR87_RS00540 0.36 -0.0
111,650 + ABZR87_RS00540 0.36 -1.0
111,650 + ABZR87_RS00540 0.36 -0.3
111,650 + ABZR87_RS00540 0.36 -0.1
111,650 + ABZR87_RS00540 0.36 -1.4
111,650 + ABZR87_RS00540 0.36 +0.7
111,650 + ABZR87_RS00540 0.36 -0.3
111,650 + ABZR87_RS00540 0.36 -0.9
111,650 + ABZR87_RS00540 0.36 -1.3
111,651 - ABZR87_RS00540 0.36 +0.7
111,651 - ABZR87_RS00540 0.36 -0.3
111,651 - ABZR87_RS00540 0.36 +0.6
111,651 - ABZR87_RS00540 0.36 -0.4
111,651 - ABZR87_RS00540 0.36 -0.9
111,651 - ABZR87_RS00540 0.36 -0.8
111,686 + ABZR87_RS00540 0.40 +1.0
111,687 - ABZR87_RS00540 0.40 -0.9
111,728 + ABZR87_RS00540 0.44 +0.9
111,729 - ABZR87_RS00540 0.45 -0.6
111,729 - ABZR87_RS00540 0.45 -2.7
112,206 + -0.7
112,218 - +0.4
112,218 - +0.7
112,218 - +0.2
112,249 + +0.3
112,249 + +1.6
112,249 + +0.5
112,249 + +0.2
112,249 + +0.9
112,250 - +0.1
112,250 - +1.2
112,250 - -0.1
112,283 + -0.2
112,283 + +0.3
112,283 + +0.3
112,283 + -0.7
112,284 - -0.0
112,284 - +0.7
112,284 - +0.4
112,284 - +1.5
112,285 + -0.4
112,285 + +0.5
112,285 + +1.0
112,286 - -0.5
112,286 - -0.4
112,286 - -1.6
112,286 - +0.0

Or see this region's nucleotide sequence