Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004576 and ABIE53_004577 are separated by 128 nucleotides ABIE53_004577 and ABIE53_004578 are separated by 12 nucleotides ABIE53_004578 and ABIE53_004579 are separated by 87 nucleotides
ABIE53_004576: ABIE53_004576 - malonate transporter, at 762,662 to 763,606
_004576
ABIE53_004577: ABIE53_004577 - hypothetical protein, at 763,735 to 764,313
_004577
ABIE53_004578: ABIE53_004578 - threonine efflux protein, at 764,326 to 764,943
_004578
ABIE53_004579: ABIE53_004579 - RNA polymerase sigma factor (sigma-70 family), at 765,031 to 766,305
_004579
Position (kb) 764
765 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 763.502 kb on + strand, within ABIE53_004576 at 763.502 kb on + strand, within ABIE53_004576 at 763.502 kb on + strand, within ABIE53_004576 at 763.502 kb on + strand, within ABIE53_004576 at 763.502 kb on + strand, within ABIE53_004576 at 763.503 kb on - strand, within ABIE53_004576 at 763.503 kb on - strand, within ABIE53_004576 at 763.503 kb on - strand, within ABIE53_004576 at 763.503 kb on - strand, within ABIE53_004576 at 763.503 kb on - strand, within ABIE53_004576 at 763.503 kb on - strand, within ABIE53_004576 at 763.584 kb on + strand at 763.584 kb on + strand at 763.585 kb on - strand at 763.585 kb on - strand at 763.669 kb on + strand at 763.747 kb on + strand at 763.747 kb on + strand at 763.747 kb on + strand at 763.747 kb on + strand at 763.747 kb on + strand at 763.748 kb on - strand at 763.748 kb on - strand at 763.748 kb on - strand at 763.903 kb on + strand, within ABIE53_004577 at 763.903 kb on + strand, within ABIE53_004577 at 763.904 kb on - strand, within ABIE53_004577 at 763.904 kb on - strand, within ABIE53_004577 at 763.907 kb on - strand, within ABIE53_004577 at 763.957 kb on + strand, within ABIE53_004577 at 763.957 kb on + strand, within ABIE53_004577 at 763.957 kb on + strand, within ABIE53_004577 at 763.957 kb on + strand, within ABIE53_004577 at 763.958 kb on - strand, within ABIE53_004577 at 763.958 kb on - strand, within ABIE53_004577 at 763.958 kb on - strand, within ABIE53_004577 at 763.958 kb on - strand, within ABIE53_004577 at 763.958 kb on - strand, within ABIE53_004577 at 763.958 kb on - strand, within ABIE53_004577 at 763.958 kb on - strand, within ABIE53_004577 at 763.958 kb on - strand, within ABIE53_004577 at 763.960 kb on + strand, within ABIE53_004577 at 763.961 kb on - strand, within ABIE53_004577 at 764.062 kb on + strand, within ABIE53_004577 at 764.062 kb on + strand, within ABIE53_004577 at 764.062 kb on + strand, within ABIE53_004577 at 764.062 kb on + strand, within ABIE53_004577 at 764.063 kb on - strand, within ABIE53_004577 at 764.063 kb on - strand, within ABIE53_004577 at 764.063 kb on - strand, within ABIE53_004577 at 764.063 kb on - strand, within ABIE53_004577 at 764.063 kb on - strand, within ABIE53_004577 at 764.063 kb on - strand, within ABIE53_004577 at 764.063 kb on - strand, within ABIE53_004577 at 764.064 kb on + strand, within ABIE53_004577 at 764.064 kb on + strand, within ABIE53_004577 at 764.064 kb on + strand, within ABIE53_004577 at 764.064 kb on + strand, within ABIE53_004577 at 764.064 kb on + strand, within ABIE53_004577 at 764.064 kb on + strand, within ABIE53_004577 at 764.065 kb on - strand, within ABIE53_004577 at 764.065 kb on - strand, within ABIE53_004577 at 764.065 kb on - strand, within ABIE53_004577 at 764.065 kb on - strand, within ABIE53_004577 at 764.065 kb on - strand, within ABIE53_004577 at 764.065 kb on - strand, within ABIE53_004577 at 764.065 kb on - strand, within ABIE53_004577 at 764.178 kb on + strand, within ABIE53_004577 at 764.179 kb on - strand, within ABIE53_004577 at 764.179 kb on - strand, within ABIE53_004577 at 764.179 kb on - strand, within ABIE53_004577 at 764.179 kb on - strand, within ABIE53_004577 at 764.179 kb on - strand, within ABIE53_004577 at 764.179 kb on - strand, within ABIE53_004577 at 764.181 kb on + strand, within ABIE53_004577 at 764.181 kb on + strand, within ABIE53_004577 at 764.182 kb on - strand, within ABIE53_004577 at 764.182 kb on - strand, within ABIE53_004577 at 764.182 kb on - strand, within ABIE53_004577 at 764.182 kb on - strand, within ABIE53_004577 at 764.182 kb on - strand, within ABIE53_004577 at 764.332 kb on + strand at 764.334 kb on + strand at 764.334 kb on + strand at 764.334 kb on + strand at 764.334 kb on + strand at 764.335 kb on - strand at 764.335 kb on - strand at 764.335 kb on - strand at 764.335 kb on - strand at 764.365 kb on + strand at 764.365 kb on + strand at 764.365 kb on + strand at 764.365 kb on + strand at 764.365 kb on + strand at 764.365 kb on + strand at 764.365 kb on + strand at 764.366 kb on - strand at 764.366 kb on - strand at 764.366 kb on - strand at 764.366 kb on - strand at 764.366 kb on - strand at 764.366 kb on - strand at 764.366 kb on - strand at 764.366 kb on - strand at 764.572 kb on + strand, within ABIE53_004578 at 764.572 kb on + strand, within ABIE53_004578 at 764.573 kb on - strand, within ABIE53_004578 at 764.573 kb on - strand, within ABIE53_004578 at 764.573 kb on - strand, within ABIE53_004578 at 764.692 kb on - strand, within ABIE53_004578 at 764.911 kb on - strand at 764.911 kb on - strand at 764.937 kb on - strand at 764.937 kb on - strand at 764.960 kb on + strand at 764.960 kb on + strand at 764.960 kb on + strand at 764.961 kb on - strand at 764.961 kb on - strand at 764.961 kb on - strand at 764.961 kb on - strand at 764.961 kb on - strand at 764.961 kb on - strand at 765.009 kb on + strand at 765.010 kb on - strand at 765.010 kb on - strand at 765.022 kb on + strand at 765.022 kb on + strand at 765.022 kb on + strand at 765.022 kb on + strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.032 kb on + strand at 765.033 kb on - strand at 765.182 kb on + strand, within ABIE53_004579 at 765.182 kb on + strand, within ABIE53_004579 at 765.182 kb on + strand, within ABIE53_004579 at 765.182 kb on + strand, within ABIE53_004579 at 765.182 kb on + strand, within ABIE53_004579 at 765.182 kb on + strand, within ABIE53_004579 at 765.183 kb on - strand, within ABIE53_004579 at 765.183 kb on - strand, within ABIE53_004579 at 765.183 kb on - strand, within ABIE53_004579 at 765.183 kb on - strand, within ABIE53_004579 at 765.220 kb on + strand, within ABIE53_004579 at 765.220 kb on + strand, within ABIE53_004579 at 765.220 kb on + strand, within ABIE53_004579 at 765.220 kb on + strand, within ABIE53_004579 at 765.220 kb on + strand, within ABIE53_004579 at 765.220 kb on + strand, within ABIE53_004579 at 765.221 kb on - strand, within ABIE53_004579 at 765.221 kb on - strand, within ABIE53_004579 at 765.221 kb on - strand, within ABIE53_004579 at 765.221 kb on - strand, within ABIE53_004579 at 765.221 kb on - strand, within ABIE53_004579 at 765.221 kb on - strand, within ABIE53_004579 at 765.221 kb on - strand, within ABIE53_004579 at 765.221 kb on - strand, within ABIE53_004579 at 765.221 kb on - strand, within ABIE53_004579 at 765.221 kb on - strand, within ABIE53_004579 at 765.222 kb on + strand, within ABIE53_004579 at 765.222 kb on + strand, within ABIE53_004579 at 765.317 kb on + strand, within ABIE53_004579 at 765.317 kb on + strand, within ABIE53_004579 at 765.317 kb on + strand, within ABIE53_004579 at 765.317 kb on + strand, within ABIE53_004579 at 765.318 kb on - strand, within ABIE53_004579 at 765.318 kb on - strand, within ABIE53_004579 at 765.318 kb on - strand, within ABIE53_004579 at 765.319 kb on + strand, within ABIE53_004579 at 765.319 kb on + strand, within ABIE53_004579 at 765.319 kb on + strand, within ABIE53_004579 at 765.319 kb on + strand, within ABIE53_004579 at 765.319 kb on + strand, within ABIE53_004579 at 765.319 kb on + strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.401 kb on + strand, within ABIE53_004579 at 765.401 kb on + strand, within ABIE53_004579 at 765.401 kb on + strand, within ABIE53_004579 at 765.683 kb on + strand, within ABIE53_004579 at 765.704 kb on + strand, within ABIE53_004579 at 765.704 kb on + strand, within ABIE53_004579 at 765.704 kb on + strand, within ABIE53_004579 at 765.704 kb on + strand, within ABIE53_004579 at 765.704 kb on + strand, within ABIE53_004579 at 765.705 kb on - strand, within ABIE53_004579 at 765.705 kb on - strand, within ABIE53_004579 at 765.705 kb on - strand, within ABIE53_004579
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 763,502 + ABIE53_004576 0.89 -0.1 763,502 + ABIE53_004576 0.89 +0.1 763,502 + ABIE53_004576 0.89 -2.5 763,502 + ABIE53_004576 0.89 -3.5 763,502 + ABIE53_004576 0.89 -1.4 763,503 - ABIE53_004576 0.89 -0.2 763,503 - ABIE53_004576 0.89 -1.1 763,503 - ABIE53_004576 0.89 -1.4 763,503 - ABIE53_004576 0.89 +0.9 763,503 - ABIE53_004576 0.89 -0.1 763,503 - ABIE53_004576 0.89 +2.5 763,584 + +0.8 763,584 + -3.3 763,585 - -1.1 763,585 - -0.5 763,669 + +2.5 763,747 + -1.4 763,747 + +0.9 763,747 + +1.5 763,747 + -1.1 763,747 + +0.6 763,748 - +0.7 763,748 - +0.1 763,748 - +1.4 763,903 + ABIE53_004577 0.29 -2.6 763,903 + ABIE53_004577 0.29 -1.7 763,904 - ABIE53_004577 0.29 +0.9 763,904 - ABIE53_004577 0.29 +0.6 763,907 - ABIE53_004577 0.30 +3.0 763,957 + ABIE53_004577 0.38 +1.5 763,957 + ABIE53_004577 0.38 -0.0 763,957 + ABIE53_004577 0.38 -1.6 763,957 + ABIE53_004577 0.38 +1.5 763,958 - ABIE53_004577 0.39 +0.5 763,958 - ABIE53_004577 0.39 -0.9 763,958 - ABIE53_004577 0.39 -2.1 763,958 - ABIE53_004577 0.39 -1.0 763,958 - ABIE53_004577 0.39 -1.7 763,958 - ABIE53_004577 0.39 -1.5 763,958 - ABIE53_004577 0.39 +1.2 763,958 - ABIE53_004577 0.39 +2.0 763,960 + ABIE53_004577 0.39 +0.8 763,961 - ABIE53_004577 0.39 +0.5 764,062 + ABIE53_004577 0.56 -1.1 764,062 + ABIE53_004577 0.56 +1.3 764,062 + ABIE53_004577 0.56 +1.2 764,062 + ABIE53_004577 0.56 -1.4 764,063 - ABIE53_004577 0.57 -1.6 764,063 - ABIE53_004577 0.57 -0.2 764,063 - ABIE53_004577 0.57 -0.5 764,063 - ABIE53_004577 0.57 -2.0 764,063 - ABIE53_004577 0.57 +1.1 764,063 - ABIE53_004577 0.57 -0.9 764,063 - ABIE53_004577 0.57 +1.5 764,064 + ABIE53_004577 0.57 +0.8 764,064 + ABIE53_004577 0.57 +0.8 764,064 + ABIE53_004577 0.57 -0.5 764,064 + ABIE53_004577 0.57 +0.5 764,064 + ABIE53_004577 0.57 +0.2 764,064 + ABIE53_004577 0.57 +1.2 764,065 - ABIE53_004577 0.57 -1.5 764,065 - ABIE53_004577 0.57 +0.2 764,065 - ABIE53_004577 0.57 -0.9 764,065 - ABIE53_004577 0.57 -4.1 764,065 - ABIE53_004577 0.57 -0.1 764,065 - ABIE53_004577 0.57 +1.3 764,065 - ABIE53_004577 0.57 -0.5 764,178 + ABIE53_004577 0.77 +0.1 764,179 - ABIE53_004577 0.77 +1.5 764,179 - ABIE53_004577 0.77 +0.5 764,179 - ABIE53_004577 0.77 +1.2 764,179 - ABIE53_004577 0.77 +1.3 764,179 - ABIE53_004577 0.77 -2.5 764,179 - ABIE53_004577 0.77 +0.1 764,181 + ABIE53_004577 0.77 -1.1 764,181 + ABIE53_004577 0.77 +1.1 764,182 - ABIE53_004577 0.77 +0.5 764,182 - ABIE53_004577 0.77 -0.5 764,182 - ABIE53_004577 0.77 +0.5 764,182 - ABIE53_004577 0.77 -2.0 764,182 - ABIE53_004577 0.77 +1.6 764,332 + +0.5 764,334 + -0.4 764,334 + -2.7 764,334 + +1.1 764,334 + +0.8 764,335 - +3.3 764,335 - +0.3 764,335 - +0.2 764,335 - +0.2 764,365 + +0.5 764,365 + -0.6 764,365 + -0.9 764,365 + -0.1 764,365 + +0.3 764,365 + -1.7 764,365 + +2.5 764,366 - +3.8 764,366 - +2.4 764,366 - -0.5 764,366 - -2.7 764,366 - +0.3 764,366 - -2.7 764,366 - +1.8 764,366 - -3.2 764,572 + ABIE53_004578 0.40 -0.4 764,572 + ABIE53_004578 0.40 -0.7 764,573 - ABIE53_004578 0.40 -3.8 764,573 - ABIE53_004578 0.40 +0.6 764,573 - ABIE53_004578 0.40 -2.5 764,692 - ABIE53_004578 0.59 -1.2 764,911 - -0.9 764,911 - -0.9 764,937 - -1.1 764,937 - +0.3 764,960 + +0.6 764,960 + -2.8 764,960 + +1.5 764,961 - -1.9 764,961 - -2.6 764,961 - -0.1 764,961 - +1.3 764,961 - -1.9 764,961 - +2.8 765,009 + -0.3 765,010 - -0.9 765,010 - +1.2 765,022 + -2.4 765,022 + -1.4 765,022 + +0.3 765,022 + -0.5 765,023 - +3.2 765,023 - +1.5 765,032 + -1.7 765,033 - +1.5 765,182 + ABIE53_004579 0.12 +0.5 765,182 + ABIE53_004579 0.12 -0.7 765,182 + ABIE53_004579 0.12 +0.7 765,182 + ABIE53_004579 0.12 +1.5 765,182 + ABIE53_004579 0.12 +1.5 765,182 + ABIE53_004579 0.12 +0.1 765,183 - ABIE53_004579 0.12 +0.5 765,183 - ABIE53_004579 0.12 -0.1 765,183 - ABIE53_004579 0.12 +0.9 765,183 - ABIE53_004579 0.12 +0.5 765,220 + ABIE53_004579 0.15 -1.5 765,220 + ABIE53_004579 0.15 -0.7 765,220 + ABIE53_004579 0.15 -1.4 765,220 + ABIE53_004579 0.15 +0.2 765,220 + ABIE53_004579 0.15 -1.7 765,220 + ABIE53_004579 0.15 -1.5 765,221 - ABIE53_004579 0.15 -0.5 765,221 - ABIE53_004579 0.15 +3.6 765,221 - ABIE53_004579 0.15 +2.6 765,221 - ABIE53_004579 0.15 -0.1 765,221 - ABIE53_004579 0.15 +2.9 765,221 - ABIE53_004579 0.15 +0.5 765,221 - ABIE53_004579 0.15 -0.6 765,221 - ABIE53_004579 0.15 +1.5 765,221 - ABIE53_004579 0.15 +2.0 765,221 - ABIE53_004579 0.15 -0.1 765,222 + ABIE53_004579 0.15 +1.4 765,222 + ABIE53_004579 0.15 +1.8 765,317 + ABIE53_004579 0.22 +0.2 765,317 + ABIE53_004579 0.22 +1.9 765,317 + ABIE53_004579 0.22 +0.7 765,317 + ABIE53_004579 0.22 -1.4 765,318 - ABIE53_004579 0.23 +0.8 765,318 - ABIE53_004579 0.23 -0.5 765,318 - ABIE53_004579 0.23 +1.9 765,319 + ABIE53_004579 0.23 +2.2 765,319 + ABIE53_004579 0.23 -1.1 765,319 + ABIE53_004579 0.23 -3.5 765,319 + ABIE53_004579 0.23 -1.4 765,319 + ABIE53_004579 0.23 -1.1 765,319 + ABIE53_004579 0.23 +3.8 765,320 - ABIE53_004579 0.23 -2.7 765,320 - ABIE53_004579 0.23 -1.7 765,320 - ABIE53_004579 0.23 -1.4 765,320 - ABIE53_004579 0.23 +0.3 765,320 - ABIE53_004579 0.23 -3.4 765,320 - ABIE53_004579 0.23 +1.7 765,320 - ABIE53_004579 0.23 +1.1 765,320 - ABIE53_004579 0.23 +2.2 765,320 - ABIE53_004579 0.23 -0.1 765,320 - ABIE53_004579 0.23 -1.1 765,401 + ABIE53_004579 0.29 +2.8 765,401 + ABIE53_004579 0.29 -0.3 765,401 + ABIE53_004579 0.29 -0.9 765,683 + ABIE53_004579 0.51 -0.3 765,704 + ABIE53_004579 0.53 -0.4 765,704 + ABIE53_004579 0.53 +0.6 765,704 + ABIE53_004579 0.53 +1.7 765,704 + ABIE53_004579 0.53 -0.5 765,704 + ABIE53_004579 0.53 +1.8 765,705 - ABIE53_004579 0.53 +0.2 765,705 - ABIE53_004579 0.53 +0.5 765,705 - ABIE53_004579 0.53 -2.1
Or see this region's nucleotide sequence