Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004113 and ABIE53_004114 are separated by 180 nucleotides ABIE53_004114 and ABIE53_004115 overlap by 4 nucleotides ABIE53_004115 and ABIE53_004116 are separated by 209 nucleotides
ABIE53_004113: ABIE53_004113 - glutamate dehydrogenase, at 281,018 to 285,874
_004113
ABIE53_004114: ABIE53_004114 - pimeloyl-ACP methyl ester carboxylesterase, at 286,055 to 286,834
_004114
ABIE53_004115: ABIE53_004115 - hypothetical protein, at 286,831 to 287,946
_004115
ABIE53_004116: ABIE53_004116 - drug/metabolite transporter (DMT)-like permease, at 288,156 to 288,992
_004116
Position (kb) 286
287
288 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 285.942 kb on + strand at 285.942 kb on + strand at 285.943 kb on - strand at 285.943 kb on - strand at 285.943 kb on - strand at 285.943 kb on - strand at 285.981 kb on + strand at 285.981 kb on + strand at 285.981 kb on + strand at 285.981 kb on + strand at 285.982 kb on - strand at 285.982 kb on - strand at 285.982 kb on - strand at 285.982 kb on - strand at 285.982 kb on - strand at 285.982 kb on - strand at 285.988 kb on + strand at 285.988 kb on + strand at 286.005 kb on + strand at 286.005 kb on + strand at 286.005 kb on + strand at 286.005 kb on + strand at 286.005 kb on + strand at 286.005 kb on + strand at 286.005 kb on + strand at 286.005 kb on + strand at 286.006 kb on - strand at 286.006 kb on - strand at 286.057 kb on - strand at 286.057 kb on - strand at 286.391 kb on - strand, within ABIE53_004114 at 286.411 kb on + strand, within ABIE53_004114 at 286.412 kb on - strand, within ABIE53_004114 at 286.607 kb on + strand, within ABIE53_004114 at 286.607 kb on + strand, within ABIE53_004114 at 286.607 kb on + strand, within ABIE53_004114 at 286.607 kb on + strand, within ABIE53_004114 at 286.607 kb on + strand, within ABIE53_004114 at 286.608 kb on - strand, within ABIE53_004114 at 286.608 kb on - strand, within ABIE53_004114 at 286.608 kb on - strand, within ABIE53_004114 at 286.608 kb on - strand, within ABIE53_004114 at 286.733 kb on + strand, within ABIE53_004114 at 286.734 kb on - strand, within ABIE53_004114 at 286.850 kb on + strand at 286.850 kb on + strand at 286.851 kb on - strand at 286.851 kb on - strand at 286.851 kb on - strand at 287.068 kb on + strand, within ABIE53_004115 at 287.068 kb on + strand, within ABIE53_004115 at 287.068 kb on + strand, within ABIE53_004115 at 287.069 kb on - strand, within ABIE53_004115 at 287.069 kb on - strand, within ABIE53_004115 at 287.069 kb on - strand, within ABIE53_004115 at 287.111 kb on + strand, within ABIE53_004115 at 287.144 kb on + strand, within ABIE53_004115 at 287.144 kb on + strand, within ABIE53_004115 at 287.144 kb on + strand, within ABIE53_004115 at 287.144 kb on + strand, within ABIE53_004115 at 287.144 kb on + strand, within ABIE53_004115 at 287.144 kb on + strand, within ABIE53_004115 at 287.144 kb on + strand, within ABIE53_004115 at 287.144 kb on + strand, within ABIE53_004115 at 287.145 kb on - strand, within ABIE53_004115 at 287.145 kb on - strand, within ABIE53_004115 at 287.145 kb on - strand, within ABIE53_004115 at 287.145 kb on - strand, within ABIE53_004115 at 287.145 kb on - strand, within ABIE53_004115 at 287.171 kb on + strand, within ABIE53_004115 at 287.216 kb on + strand, within ABIE53_004115 at 287.216 kb on + strand, within ABIE53_004115 at 287.216 kb on + strand, within ABIE53_004115 at 287.216 kb on + strand, within ABIE53_004115 at 287.216 kb on + strand, within ABIE53_004115 at 287.217 kb on - strand, within ABIE53_004115 at 287.217 kb on - strand, within ABIE53_004115 at 287.217 kb on - strand, within ABIE53_004115 at 287.217 kb on - strand, within ABIE53_004115 at 287.379 kb on + strand, within ABIE53_004115 at 287.379 kb on + strand, within ABIE53_004115 at 287.379 kb on + strand, within ABIE53_004115 at 287.379 kb on + strand, within ABIE53_004115 at 287.380 kb on - strand, within ABIE53_004115 at 287.380 kb on - strand, within ABIE53_004115 at 287.380 kb on - strand, within ABIE53_004115 at 287.627 kb on + strand, within ABIE53_004115 at 287.627 kb on + strand, within ABIE53_004115 at 287.627 kb on + strand, within ABIE53_004115 at 287.627 kb on + strand, within ABIE53_004115 at 287.627 kb on + strand, within ABIE53_004115 at 287.628 kb on - strand, within ABIE53_004115 at 287.628 kb on - strand, within ABIE53_004115 at 287.628 kb on - strand, within ABIE53_004115 at 287.628 kb on - strand, within ABIE53_004115 at 287.628 kb on - strand, within ABIE53_004115 at 287.709 kb on + strand, within ABIE53_004115 at 287.727 kb on + strand, within ABIE53_004115 at 287.825 kb on + strand, within ABIE53_004115 at 287.825 kb on + strand, within ABIE53_004115 at 287.825 kb on + strand, within ABIE53_004115 at 287.825 kb on + strand, within ABIE53_004115 at 287.826 kb on - strand, within ABIE53_004115 at 287.919 kb on + strand at 287.919 kb on + strand at 287.919 kb on + strand at 287.919 kb on + strand at 287.920 kb on - strand at 287.920 kb on - strand at 287.920 kb on - strand at 287.920 kb on - strand at 287.920 kb on - strand at 287.920 kb on - strand at 287.920 kb on - strand at 287.921 kb on + strand at 287.921 kb on + strand at 287.921 kb on + strand at 287.921 kb on + strand at 287.921 kb on + strand at 287.921 kb on + strand at 287.921 kb on + strand at 287.921 kb on + strand at 287.921 kb on + strand at 287.921 kb on + strand at 287.921 kb on + strand at 287.921 kb on + strand at 287.922 kb on - strand at 287.922 kb on - strand at 287.922 kb on - strand at 287.922 kb on - strand at 287.922 kb on - strand at 287.922 kb on - strand at 287.922 kb on - strand at 287.922 kb on - strand at 287.922 kb on - strand at 288.097 kb on + strand at 288.097 kb on + strand at 288.097 kb on + strand at 288.097 kb on + strand at 288.098 kb on - strand at 288.130 kb on + strand at 288.130 kb on + strand at 288.130 kb on + strand at 288.131 kb on - strand at 288.273 kb on + strand, within ABIE53_004116 at 288.274 kb on - strand, within ABIE53_004116 at 288.274 kb on - strand, within ABIE53_004116 at 288.336 kb on + strand, within ABIE53_004116 at 288.336 kb on + strand, within ABIE53_004116 at 288.336 kb on + strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.337 kb on - strand, within ABIE53_004116 at 288.338 kb on + strand, within ABIE53_004116 at 288.338 kb on + strand, within ABIE53_004116 at 288.338 kb on + strand, within ABIE53_004116 at 288.338 kb on + strand, within ABIE53_004116 at 288.338 kb on + strand, within ABIE53_004116 at 288.338 kb on + strand, within ABIE53_004116 at 288.338 kb on + strand, within ABIE53_004116 at 288.338 kb on + strand, within ABIE53_004116 at 288.338 kb on + strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.339 kb on - strand, within ABIE53_004116 at 288.393 kb on + strand, within ABIE53_004116 at 288.621 kb on + strand, within ABIE53_004116 at 288.622 kb on - strand, within ABIE53_004116 at 288.622 kb on - strand, within ABIE53_004116 at 288.672 kb on + strand, within ABIE53_004116 at 288.672 kb on + strand, within ABIE53_004116 at 288.672 kb on + strand, within ABIE53_004116 at 288.672 kb on + strand, within ABIE53_004116 at 288.673 kb on - strand, within ABIE53_004116 at 288.673 kb on - strand, within ABIE53_004116 at 288.673 kb on - strand, within ABIE53_004116 at 288.673 kb on - strand, within ABIE53_004116 at 288.673 kb on - strand, within ABIE53_004116 at 288.687 kb on + strand, within ABIE53_004116 at 288.687 kb on + strand, within ABIE53_004116 at 288.687 kb on + strand, within ABIE53_004116 at 288.688 kb on - strand, within ABIE53_004116 at 288.688 kb on - strand, within ABIE53_004116 at 288.688 kb on - strand, within ABIE53_004116 at 288.688 kb on - strand, within ABIE53_004116 at 288.813 kb on + strand, within ABIE53_004116 at 288.813 kb on + strand, within ABIE53_004116 at 288.814 kb on - strand, within ABIE53_004116 at 288.834 kb on + strand, within ABIE53_004116 at 288.835 kb on - strand, within ABIE53_004116 at 288.840 kb on + strand, within ABIE53_004116 at 288.840 kb on + strand, within ABIE53_004116 at 288.841 kb on - strand, within ABIE53_004116 at 288.841 kb on - strand, within ABIE53_004116
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 285,942 + +1.6 285,942 + +2.0 285,943 - -1.5 285,943 - -1.8 285,943 - -0.1 285,943 - +0.6 285,981 + +0.4 285,981 + -0.4 285,981 + -2.2 285,981 + -1.5 285,982 - +0.0 285,982 - +0.3 285,982 - -1.2 285,982 - -3.3 285,982 - +1.6 285,982 - -2.2 285,988 + -1.8 285,988 + -1.8 286,005 + -1.4 286,005 + +0.1 286,005 + +1.6 286,005 + -1.5 286,005 + -1.5 286,005 + -1.3 286,005 + -0.9 286,005 + -1.2 286,006 - +1.0 286,006 - -0.6 286,057 - +1.0 286,057 - +3.8 286,391 - ABIE53_004114 0.43 -0.5 286,411 + ABIE53_004114 0.46 +2.5 286,412 - ABIE53_004114 0.46 -0.7 286,607 + ABIE53_004114 0.71 +1.0 286,607 + ABIE53_004114 0.71 +1.6 286,607 + ABIE53_004114 0.71 +0.2 286,607 + ABIE53_004114 0.71 +3.4 286,607 + ABIE53_004114 0.71 -2.4 286,608 - ABIE53_004114 0.71 +1.3 286,608 - ABIE53_004114 0.71 -1.1 286,608 - ABIE53_004114 0.71 +4.0 286,608 - ABIE53_004114 0.71 +0.6 286,733 + ABIE53_004114 0.87 -1.8 286,734 - ABIE53_004114 0.87 +0.1 286,850 + +1.5 286,850 + +0.6 286,851 - +1.0 286,851 - +0.6 286,851 - +1.5 287,068 + ABIE53_004115 0.21 -0.4 287,068 + ABIE53_004115 0.21 +2.8 287,068 + ABIE53_004115 0.21 +1.9 287,069 - ABIE53_004115 0.21 +4.0 287,069 - ABIE53_004115 0.21 -1.3 287,069 - ABIE53_004115 0.21 +1.6 287,111 + ABIE53_004115 0.25 -0.2 287,144 + ABIE53_004115 0.28 -2.2 287,144 + ABIE53_004115 0.28 -1.4 287,144 + ABIE53_004115 0.28 -1.4 287,144 + ABIE53_004115 0.28 -2.0 287,144 + ABIE53_004115 0.28 -0.4 287,144 + ABIE53_004115 0.28 -0.8 287,144 + ABIE53_004115 0.28 +2.4 287,144 + ABIE53_004115 0.28 +1.5 287,145 - ABIE53_004115 0.28 +3.0 287,145 - ABIE53_004115 0.28 +0.6 287,145 - ABIE53_004115 0.28 +0.9 287,145 - ABIE53_004115 0.28 -1.4 287,145 - ABIE53_004115 0.28 +1.3 287,171 + ABIE53_004115 0.30 +2.2 287,216 + ABIE53_004115 0.34 +2.0 287,216 + ABIE53_004115 0.34 +2.1 287,216 + ABIE53_004115 0.34 +0.6 287,216 + ABIE53_004115 0.34 +2.4 287,216 + ABIE53_004115 0.34 +0.4 287,217 - ABIE53_004115 0.35 +2.1 287,217 - ABIE53_004115 0.35 -2.9 287,217 - ABIE53_004115 0.35 +1.2 287,217 - ABIE53_004115 0.35 +0.6 287,379 + ABIE53_004115 0.49 +0.5 287,379 + ABIE53_004115 0.49 -0.4 287,379 + ABIE53_004115 0.49 -1.7 287,379 + ABIE53_004115 0.49 -0.9 287,380 - ABIE53_004115 0.49 +1.1 287,380 - ABIE53_004115 0.49 +4.3 287,380 - ABIE53_004115 0.49 -0.4 287,627 + ABIE53_004115 0.71 +1.4 287,627 + ABIE53_004115 0.71 -0.7 287,627 + ABIE53_004115 0.71 -1.2 287,627 + ABIE53_004115 0.71 +1.1 287,627 + ABIE53_004115 0.71 +1.6 287,628 - ABIE53_004115 0.71 +0.6 287,628 - ABIE53_004115 0.71 -1.2 287,628 - ABIE53_004115 0.71 +3.0 287,628 - ABIE53_004115 0.71 +0.2 287,628 - ABIE53_004115 0.71 +1.3 287,709 + ABIE53_004115 0.79 -0.7 287,727 + ABIE53_004115 0.80 -1.4 287,825 + ABIE53_004115 0.89 +0.9 287,825 + ABIE53_004115 0.89 +0.5 287,825 + ABIE53_004115 0.89 -1.8 287,825 + ABIE53_004115 0.89 +0.8 287,826 - ABIE53_004115 0.89 +1.1 287,919 + -2.3 287,919 + -1.8 287,919 + +0.9 287,919 + +0.3 287,920 - +5.1 287,920 - -2.1 287,920 - +4.5 287,920 - +3.3 287,920 - +2.4 287,920 - -1.0 287,920 - -0.4 287,921 + +1.2 287,921 + +0.6 287,921 + +1.6 287,921 + +3.6 287,921 + -0.4 287,921 + +2.4 287,921 + -1.4 287,921 + -1.1 287,921 + -1.5 287,921 + +0.8 287,921 + +1.7 287,921 + -1.7 287,922 - -3.0 287,922 - -0.0 287,922 - +3.1 287,922 - -0.6 287,922 - +0.6 287,922 - -2.0 287,922 - -4.5 287,922 - -0.4 287,922 - -1.7 288,097 + +1.3 288,097 + -1.4 288,097 + -0.4 288,097 + +2.6 288,098 - +3.4 288,130 + -1.2 288,130 + +1.2 288,130 + +1.3 288,131 - +0.1 288,273 + ABIE53_004116 0.14 -0.4 288,274 - ABIE53_004116 0.14 -0.2 288,274 - ABIE53_004116 0.14 +0.5 288,336 + ABIE53_004116 0.22 +2.3 288,336 + ABIE53_004116 0.22 +0.7 288,336 + ABIE53_004116 0.22 -0.4 288,337 - ABIE53_004116 0.22 +0.9 288,337 - ABIE53_004116 0.22 +0.9 288,337 - ABIE53_004116 0.22 -1.5 288,337 - ABIE53_004116 0.22 +0.5 288,337 - ABIE53_004116 0.22 +0.5 288,337 - ABIE53_004116 0.22 -0.1 288,337 - ABIE53_004116 0.22 +1.8 288,337 - ABIE53_004116 0.22 -1.7 288,337 - ABIE53_004116 0.22 -0.7 288,337 - ABIE53_004116 0.22 +2.1 288,337 - ABIE53_004116 0.22 +2.9 288,337 - ABIE53_004116 0.22 -4.0 288,337 - ABIE53_004116 0.22 -1.5 288,337 - ABIE53_004116 0.22 -2.3 288,338 + ABIE53_004116 0.22 -0.9 288,338 + ABIE53_004116 0.22 -0.9 288,338 + ABIE53_004116 0.22 -1.4 288,338 + ABIE53_004116 0.22 -1.1 288,338 + ABIE53_004116 0.22 -0.8 288,338 + ABIE53_004116 0.22 +1.6 288,338 + ABIE53_004116 0.22 +1.2 288,338 + ABIE53_004116 0.22 +0.6 288,338 + ABIE53_004116 0.22 +0.4 288,339 - ABIE53_004116 0.22 +0.3 288,339 - ABIE53_004116 0.22 +1.3 288,339 - ABIE53_004116 0.22 +0.5 288,339 - ABIE53_004116 0.22 -1.4 288,339 - ABIE53_004116 0.22 -0.7 288,339 - ABIE53_004116 0.22 +0.9 288,339 - ABIE53_004116 0.22 +0.6 288,339 - ABIE53_004116 0.22 +0.6 288,339 - ABIE53_004116 0.22 -2.5 288,339 - ABIE53_004116 0.22 -2.3 288,339 - ABIE53_004116 0.22 -1.3 288,339 - ABIE53_004116 0.22 +1.9 288,339 - ABIE53_004116 0.22 +0.6 288,393 + ABIE53_004116 0.28 +0.6 288,621 + ABIE53_004116 0.56 -0.9 288,622 - ABIE53_004116 0.56 -0.7 288,622 - ABIE53_004116 0.56 +3.6 288,672 + ABIE53_004116 0.62 +0.7 288,672 + ABIE53_004116 0.62 +1.6 288,672 + ABIE53_004116 0.62 -0.4 288,672 + ABIE53_004116 0.62 +2.5 288,673 - ABIE53_004116 0.62 -0.0 288,673 - ABIE53_004116 0.62 -1.4 288,673 - ABIE53_004116 0.62 +1.5 288,673 - ABIE53_004116 0.62 +0.7 288,673 - ABIE53_004116 0.62 +0.1 288,687 + ABIE53_004116 0.63 +2.6 288,687 + ABIE53_004116 0.63 +1.4 288,687 + ABIE53_004116 0.63 +0.1 288,688 - ABIE53_004116 0.64 +1.1 288,688 - ABIE53_004116 0.64 +0.6 288,688 - ABIE53_004116 0.64 -2.2 288,688 - ABIE53_004116 0.64 +1.1 288,813 + ABIE53_004116 0.78 +2.6 288,813 + ABIE53_004116 0.78 +1.9 288,814 - ABIE53_004116 0.79 +0.1 288,834 + ABIE53_004116 0.81 -0.1 288,835 - ABIE53_004116 0.81 -1.4 288,840 + ABIE53_004116 0.82 +0.6 288,840 + ABIE53_004116 0.82 -0.4 288,841 - ABIE53_004116 0.82 -1.5 288,841 - ABIE53_004116 0.82 -3.0
Or see this region's nucleotide sequence