Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003662 and ABIE53_003663 are separated by 128 nucleotides ABIE53_003663 and ABIE53_003664 are separated by 6 nucleotides
ABIE53_003662: ABIE53_003662 - glutamyl-tRNA reductase, at 4,118,589 to 4,119,875
_003662
ABIE53_003663: ABIE53_003663 - peptide chain release factor 1, at 4,120,004 to 4,121,086
_003663
ABIE53_003664: ABIE53_003664 - release factor glutamine methyltransferase, at 4,121,093 to 4,121,962
_003664
Position (kb) 4120
4121
4122 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4119.846 kb on + strand at 4119.846 kb on + strand at 4121.215 kb on + strand, within ABIE53_003664 at 4121.215 kb on + strand, within ABIE53_003664 at 4121.215 kb on + strand, within ABIE53_003664 at 4121.215 kb on + strand, within ABIE53_003664 at 4121.216 kb on - strand, within ABIE53_003664 at 4121.270 kb on + strand, within ABIE53_003664 at 4121.270 kb on + strand, within ABIE53_003664 at 4121.271 kb on - strand, within ABIE53_003664 at 4121.271 kb on - strand, within ABIE53_003664 at 4121.271 kb on - strand, within ABIE53_003664 at 4121.631 kb on - strand, within ABIE53_003664 at 4121.684 kb on + strand, within ABIE53_003664 at 4121.684 kb on + strand, within ABIE53_003664 at 4121.684 kb on + strand, within ABIE53_003664 at 4121.684 kb on + strand, within ABIE53_003664 at 4121.685 kb on - strand, within ABIE53_003664 at 4121.686 kb on + strand, within ABIE53_003664 at 4121.686 kb on + strand, within ABIE53_003664 at 4121.686 kb on + strand, within ABIE53_003664 at 4121.687 kb on - strand, within ABIE53_003664 at 4121.687 kb on - strand, within ABIE53_003664 at 4121.687 kb on - strand, within ABIE53_003664 at 4121.687 kb on - strand, within ABIE53_003664 at 4121.846 kb on + strand, within ABIE53_003664 at 4121.980 kb on + strand at 4121.980 kb on + strand at 4121.980 kb on + strand at 4121.980 kb on + strand at 4121.980 kb on + strand at 4121.980 kb on + strand at 4121.980 kb on + strand at 4121.980 kb on + strand at 4121.980 kb on + strand at 4121.981 kb on - strand at 4121.981 kb on - strand at 4121.981 kb on - strand at 4121.981 kb on - strand at 4121.981 kb on - strand at 4121.981 kb on - strand at 4121.993 kb on + strand at 4121.993 kb on + strand at 4121.994 kb on - strand at 4121.994 kb on - strand at 4121.994 kb on - strand at 4121.994 kb on - strand at 4122.015 kb on + strand at 4122.015 kb on + strand at 4122.084 kb on + strand at 4122.084 kb on + strand at 4122.084 kb on + strand at 4122.084 kb on + strand at 4122.085 kb on - strand at 4122.085 kb on - strand at 4122.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,119,846 + +1.2 4,119,846 + -1.4 4,121,215 + ABIE53_003664 0.14 -3.2 4,121,215 + ABIE53_003664 0.14 +1.4 4,121,215 + ABIE53_003664 0.14 -1.6 4,121,215 + ABIE53_003664 0.14 -0.6 4,121,216 - ABIE53_003664 0.14 -3.2 4,121,270 + ABIE53_003664 0.20 -1.0 4,121,270 + ABIE53_003664 0.20 -2.0 4,121,271 - ABIE53_003664 0.20 -1.4 4,121,271 - ABIE53_003664 0.20 +1.4 4,121,271 - ABIE53_003664 0.20 -2.0 4,121,631 - ABIE53_003664 0.62 -0.6 4,121,684 + ABIE53_003664 0.68 -0.5 4,121,684 + ABIE53_003664 0.68 -2.8 4,121,684 + ABIE53_003664 0.68 -1.0 4,121,684 + ABIE53_003664 0.68 -1.4 4,121,685 - ABIE53_003664 0.68 +0.4 4,121,686 + ABIE53_003664 0.68 -1.0 4,121,686 + ABIE53_003664 0.68 -1.2 4,121,686 + ABIE53_003664 0.68 -1.6 4,121,687 - ABIE53_003664 0.68 -1.0 4,121,687 - ABIE53_003664 0.68 -4.4 4,121,687 - ABIE53_003664 0.68 -1.2 4,121,687 - ABIE53_003664 0.68 -2.2 4,121,846 + ABIE53_003664 0.87 -2.3 4,121,980 + -1.6 4,121,980 + -0.6 4,121,980 + -0.5 4,121,980 + +1.6 4,121,980 + +1.4 4,121,980 + +1.6 4,121,980 + +1.7 4,121,980 + +1.0 4,121,980 + +2.8 4,121,981 - +2.4 4,121,981 - -2.8 4,121,981 - +0.4 4,121,981 - +1.8 4,121,981 - +1.6 4,121,981 - +1.7 4,121,993 + -0.2 4,121,993 + +1.5 4,121,994 - -1.0 4,121,994 - +2.0 4,121,994 - -0.2 4,121,994 - -0.6 4,122,015 + +2.4 4,122,015 + +3.0 4,122,084 + -0.8 4,122,084 + +1.6 4,122,084 + -0.6 4,122,084 + +0.7 4,122,085 - -1.8 4,122,085 - -3.0 4,122,085 - -1.6
Or see this region's nucleotide sequence