Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003167

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,579,552	+				+1.0
3,579,552	+				+0.4
3,579,553	-				-0.6
3,579,573	+				+0.4
3,579,573	+				+1.2
3,579,574	-				-1.9
3,579,574	-				+2.6
3,579,576	+				+2.1
3,579,576	+				-1.2
3,579,576	+				-3.1
3,579,576	+				+0.4
3,579,576	+				-2.3
3,579,577	-				+2.0
3,579,577	-				-0.6
3,579,577	-				+3.8
3,579,577	-				-1.2
3,579,577	-				+0.5
3,579,709	+		ABIE53_003165	0.19	+0.4
3,579,710	-		ABIE53_003165	0.20	+0.6
3,579,710	-		ABIE53_003165	0.20	-0.5
3,579,750	+		ABIE53_003165	0.31	+1.5
3,579,750	+		ABIE53_003165	0.31	-0.6
3,579,750	+		ABIE53_003165	0.31	-1.8
3,579,750	+		ABIE53_003165	0.31	+0.3
3,579,750	+		ABIE53_003165	0.31	+1.4
3,579,750	+		ABIE53_003165	0.31	-1.3
3,579,750	+		ABIE53_003165	0.31	-0.2
3,579,750	+		ABIE53_003165	0.31	-0.2
3,579,750	+		ABIE53_003165	0.31	-1.0
3,579,751	-		ABIE53_003165	0.31	-0.2
3,579,751	-		ABIE53_003165	0.31	-0.6
3,579,751	-		ABIE53_003165	0.31	-0.8
3,579,751	-		ABIE53_003165	0.31	-1.4
3,579,751	-		ABIE53_003165	0.31	+3.0
3,579,751	-		ABIE53_003165	0.31	-1.2
3,579,751	-		ABIE53_003165	0.31	+2.0
3,579,751	-		ABIE53_003165	0.31	+1.2
3,579,751	-		ABIE53_003165	0.31	-1.2
3,579,751	-		ABIE53_003165	0.31	-1.9
3,579,751	-		ABIE53_003165	0.31	+0.2
3,579,752	+		ABIE53_003165	0.31	-1.9
3,579,752	+		ABIE53_003165	0.31	+0.4
3,579,752	+		ABIE53_003165	0.31	-0.5
3,579,752	+		ABIE53_003165	0.31	-1.1
3,579,752	+		ABIE53_003165	0.31	-0.0
3,579,752	+		ABIE53_003165	0.31	-1.8
3,579,753	-		ABIE53_003165	0.32	-0.9
3,579,753	-		ABIE53_003165	0.32	+0.4
3,579,753	-		ABIE53_003165	0.32	+0.0
3,579,810	+		ABIE53_003165	0.47	+0.4
3,579,810	+		ABIE53_003165	0.47	-0.9
3,579,811	-		ABIE53_003165	0.48	+0.5
3,579,811	-		ABIE53_003165	0.48	+0.4
3,579,900	+		ABIE53_003165	0.72	+0.6
3,579,900	+		ABIE53_003165	0.72	+0.6
3,579,900	+		ABIE53_003165	0.72	+3.0
3,579,900	+		ABIE53_003165	0.72	+1.4
3,579,900	+		ABIE53_003165	0.72	-2.4
3,579,900	+		ABIE53_003165	0.72	-0.9
3,579,900	+		ABIE53_003165	0.72	+0.7
3,579,900	+		ABIE53_003165	0.72	-1.4
3,579,900	+		ABIE53_003165	0.72	+0.3
3,579,900	+		ABIE53_003165	0.72	+1.9
3,579,900	+		ABIE53_003165	0.72	+0.9
3,579,900	+		ABIE53_003165	0.72	-2.6
3,579,901	-		ABIE53_003165	0.73	+0.2
3,579,901	-		ABIE53_003165	0.73	+1.4
3,579,901	-		ABIE53_003165	0.73	-0.6
3,579,901	-		ABIE53_003165	0.73	+0.2
3,579,901	-		ABIE53_003165	0.73	-0.1
3,579,901	-		ABIE53_003165	0.73	+0.8
3,579,901	-		ABIE53_003165	0.73	+0.2
3,579,901	-		ABIE53_003165	0.73	-3.3
3,579,901	-		ABIE53_003165	0.73	-1.4
3,579,901	-		ABIE53_003165	0.73	-1.6
3,579,901	-		ABIE53_003165	0.73	-0.0
3,579,901	-		ABIE53_003165	0.73	-1.4
3,579,901	-		ABIE53_003165	0.73	-0.5
3,579,918	+		ABIE53_003165	0.78	-1.6
3,580,021	-				-0.3
3,580,078	+				-0.9
3,580,078	+				+1.0
3,580,078	+				+3.6
3,580,087	+				-2.6
3,580,087	+				-0.2
3,580,087	+				-2.4
3,580,087	+				+1.8
3,580,088	-				-2.0
3,580,088	-				+0.1
3,580,088	-				+1.4
3,580,088	-				+0.4
3,580,088	-				+0.4
3,580,171	+		ABIE53_003166	0.32	-1.9
3,580,171	+		ABIE53_003166	0.32	+1.8
3,580,171	+		ABIE53_003166	0.32	+1.2
3,580,171	+		ABIE53_003166	0.32	-1.2
3,580,171	+		ABIE53_003166	0.32	-1.4
3,580,171	+		ABIE53_003166	0.32	+1.1
3,580,171	+		ABIE53_003166	0.32	-1.4
3,580,171	+		ABIE53_003166	0.32	-2.5
3,580,171	+		ABIE53_003166	0.32	-0.9
3,580,171	+		ABIE53_003166	0.32	+0.8
3,580,172	-		ABIE53_003166	0.33	+0.4
3,580,172	-		ABIE53_003166	0.33	+0.6
3,580,172	-		ABIE53_003166	0.33	-1.2
3,580,172	-		ABIE53_003166	0.33	+1.4
3,580,172	-		ABIE53_003166	0.33	+0.3
3,580,172	-		ABIE53_003166	0.33	-0.2
3,580,172	-		ABIE53_003166	0.33	+0.5
3,580,172	-		ABIE53_003166	0.33	-1.2
3,580,172	-		ABIE53_003166	0.33	+0.5
3,580,172	-		ABIE53_003166	0.33	+1.1
3,580,172	-		ABIE53_003166	0.33	+0.4
3,580,172	-		ABIE53_003166	0.33	+0.5
3,580,335	+				-0.2
3,580,335	+				-1.8
3,580,335	+				+1.6
3,580,335	+				-1.2
3,580,335	+				+1.4
3,580,335	+				+2.2
3,580,335	+				-0.2
3,580,335	+				-0.6
3,580,336	-				-0.6
3,580,336	-				-0.0
3,580,336	-				+0.6
3,580,336	-				+0.4
3,580,336	-				+3.2
3,580,336	-				+0.4
3,580,336	-				-1.6
3,580,336	-				-0.6
3,580,398	+				-0.9
3,580,398	+				+2.6
3,580,398	+				-1.6
3,580,398	+				-1.8
3,580,398	+				+0.9
3,580,398	+				-0.2
3,580,398	+				-1.2
3,580,398	+				-0.2
3,580,399	-				+0.7
3,580,399	-				+0.4
3,580,399	-				-1.2
3,580,399	-				-2.2
3,580,399	-				+0.2
3,580,399	-				-0.5
3,580,399	-				-0.9
3,580,399	-				-0.4
3,580,399	-				+1.4
3,580,399	-				+0.1
3,580,400	-				-0.2
3,580,405	+				-0.2
3,580,405	+				+0.3
3,580,406	-				+0.8
3,580,406	-				+0.5
3,580,462	+				-1.4
3,580,463	-				-0.9
3,580,463	-				-0.6
3,580,472	+				-0.9
3,580,472	+				-0.2
3,580,473	-				-1.2
3,580,535	+				+0.4
3,580,536	-				-1.2
3,580,640	+		ABIE53_003167	0.16	-1.4
3,580,640	+		ABIE53_003167	0.16	+0.1
3,580,640	+		ABIE53_003167	0.16	-0.8
3,580,640	+		ABIE53_003167	0.16	-1.2
3,580,641	-		ABIE53_003167	0.16	-2.4
3,580,641	-		ABIE53_003167	0.16	-2.1
3,580,641	-		ABIE53_003167	0.16	-3.0
3,580,641	-		ABIE53_003167	0.16	-0.9
3,580,641	-		ABIE53_003167	0.16	+0.6
3,580,644	-		ABIE53_003167	0.16	-0.2
3,580,644	-		ABIE53_003167	0.16	+1.0
3,580,644	-		ABIE53_003167	0.16	-4.1
3,580,644	-		ABIE53_003167	0.16	-4.0
3,580,775	+		ABIE53_003167	0.28	-4.5
3,580,775	+		ABIE53_003167	0.28	-0.6
3,580,775	+		ABIE53_003167	0.28	-2.8
3,580,776	-		ABIE53_003167	0.28	-0.9
3,580,997	+		ABIE53_003167	0.49	-0.9
3,580,997	+		ABIE53_003167	0.49	-1.2
3,580,998	-		ABIE53_003167	0.49	-1.9
3,580,998	-		ABIE53_003167	0.49	-1.3
3,581,030	-		ABIE53_003167	0.52	-3.3
3,581,030	-		ABIE53_003167	0.52	-0.2
3,581,102	+		ABIE53_003167	0.58	-1.8
3,581,102	+		ABIE53_003167	0.58	-0.5
3,581,102	+		ABIE53_003167	0.58	-0.6
3,581,103	-		ABIE53_003167	0.59	-0.2
3,581,103	-		ABIE53_003167	0.59	-1.8
3,581,103	-		ABIE53_003167	0.59	-0.0
3,581,103	-		ABIE53_003167	0.59	-1.6
3,581,103	-		ABIE53_003167	0.59	-2.3
3,581,162	+		ABIE53_003167	0.64	-2.2
3,581,418	+		ABIE53_003167	0.88	-3.0
3,581,419	-		ABIE53_003167	0.88	-2.3
3,581,419	-		ABIE53_003167	0.88	-0.6
3,581,518	+				-2.2
3,581,518	+				-1.8
3,581,518	+				-0.6
3,581,518	+				-1.6
3,581,519	-				-3.0
3,581,519	-				-1.9
3,581,519	-				-4.1
3,581,519	-				-2.9
3,581,519	-				-2.7
3,581,519	-				-1.4
3,581,519	-				-0.2
3,581,519	-				-0.6
3,581,519	-				-1.4
3,581,521	+				-2.9
3,581,522	-				-1.2
3,581,522	-				+0.8
3,581,522	-				-2.9
3,581,522	-				+0.4
3,581,550	+				-0.2
3,581,550	+				-3.2
3,581,550	+				-1.8
3,581,550	+				-0.9
3,581,551	-				+1.9
3,581,551	-				+2.4
3,581,551	-				+1.3
3,581,551	-				+2.1
3,581,551	-				+1.8
3,581,551	-				+2.8
3,581,552	+				-1.0
3,581,552	+				+1.4
3,581,552	+				-4.0
3,581,552	+				+0.4
3,581,552	+				+0.4
3,581,552	+				-3.7
3,581,552	+				-4.3
3,581,552	+				-2.8
3,581,553	-				+2.2
3,581,553	-				+1.9
3,581,553	-				+3.4
3,581,553	-				+2.7
3,581,553	-				+0.8
3,581,553	-				+2.5
3,581,553	-				+2.1
3,581,553	-				-1.8
3,581,553	-				+3.9
3,581,553	-				+1.1
3,581,553	-				+2.7
3,581,594	+				-0.5
3,581,594	+				-2.3
3,581,605	+				-1.3
3,581,605	+				+3.2
3,581,605	+				+2.0
3,581,606	-				-0.9
3,581,606	-				-2.2
3,581,606	-				-2.3
3,581,606	-				+0.2
3,581,606	-				-0.2
3,581,616	+				-1.8
3,581,630	+				-1.2
3,581,630	+				+1.2
3,581,630	+				-0.6
3,581,630	+				-0.2
3,581,630	+				+0.8
3,581,630	+				+2.5
3,581,630	+				+1.1
3,581,630	+				+2.9
3,581,630	+				+1.2
3,581,630	+				+1.4
3,581,630	+				+2.0
3,581,631	-				-1.9
3,581,631	-				-0.6
3,581,631	-				+0.8
3,581,631	-				-4.6
3,581,631	-				-2.3
3,581,631	-				-0.4
3,581,631	-				-1.8
3,581,644	-				+0.2
3,581,660	+				+1.3
3,581,660	+				+0.4
3,581,661	-				-3.4
3,581,661	-				-1.5
3,581,661	-				-3.8
3,581,661	-				-0.2
3,581,661	-				-2.2
3,581,662	+				-0.5
3,581,662	+				+0.5
3,581,662	+				-1.8
3,581,663	-				-2.0
3,581,663	-				-1.4
3,581,663	-				-0.5
3,581,663	-				+0.1
3,581,722	+				-3.0
3,581,790	+		ABIE53_003168	0.22	-1.8
3,581,790	+		ABIE53_003168	0.22	-1.6
3,581,790	+		ABIE53_003168	0.22	-4.1
3,581,790	+		ABIE53_003168	0.22	-1.4
3,581,791	-		ABIE53_003168	0.22	-2.2
3,581,868	+		ABIE53_003168	0.38	-3.0
3,581,868	+		ABIE53_003168	0.38	-2.8
3,581,868	+		ABIE53_003168	0.38	-1.8
3,581,868	+		ABIE53_003168	0.38	-1.6
3,581,868	+		ABIE53_003168	0.38	-1.4
3,581,868	+		ABIE53_003168	0.38	+1.8
3,581,868	+		ABIE53_003168	0.38	-0.9
3,581,869	-		ABIE53_003168	0.38	-3.2
3,581,869	-		ABIE53_003168	0.38	-0.2
3,581,869	-		ABIE53_003168	0.38	+0.1
3,581,869	-		ABIE53_003168	0.38	-2.0
3,581,869	-		ABIE53_003168	0.38	-1.0
3,581,869	-		ABIE53_003168	0.38	-0.4
3,581,869	-		ABIE53_003168	0.38	-1.6
3,581,869	-		ABIE53_003168	0.38	-1.6
3,581,869	-		ABIE53_003168	0.38	-2.2
3,581,869	-		ABIE53_003168	0.38	-2.5
3,581,869	-		ABIE53_003168	0.38	-1.8
3,581,869	-		ABIE53_003168	0.38	-0.5
3,581,871	+		ABIE53_003168	0.38	-1.2
3,581,871	+		ABIE53_003168	0.38	+2.2
3,581,871	+		ABIE53_003168	0.38	-2.9
3,581,871	+		ABIE53_003168	0.38	-2.6
3,581,871	+		ABIE53_003168	0.38	+0.9
3,581,871	+		ABIE53_003168	0.38	+0.7
3,581,871	+		ABIE53_003168	0.38	-0.6
3,581,871	+		ABIE53_003168	0.38	-2.0
3,581,872	-		ABIE53_003168	0.38	+1.4
3,581,872	-		ABIE53_003168	0.38	-3.0
3,581,872	-		ABIE53_003168	0.38	-2.0
3,581,872	-		ABIE53_003168	0.38	-2.2
3,581,872	-		ABIE53_003168	0.38	-2.5
3,581,872	-		ABIE53_003168	0.38	+0.4
3,581,872	-		ABIE53_003168	0.38	-2.6
3,581,872	-		ABIE53_003168	0.38	-3.5
3,581,872	-		ABIE53_003168	0.38	+0.3
3,581,872	-		ABIE53_003168	0.38	-4.1
3,582,042	+		ABIE53_003168	0.73	-1.3
3,582,042	+		ABIE53_003168	0.73	-3.8
3,582,043	-		ABIE53_003168	0.74	+0.4
3,582,043	-		ABIE53_003168	0.74	-2.6
3,582,043	-		ABIE53_003168	0.74	-2.2
3,582,043	-		ABIE53_003168	0.74	+2.1
3,582,175	+				+0.1
3,582,175	+				-0.9
3,582,175	+				-2.0
3,582,175	+				-2.2
3,582,175	+				-1.6
3,582,176	-				-2.9
3,582,176	-				+1.6
3,582,176	-				-2.5
3,582,176	-				-0.3
3,582,176	-				-0.9
3,582,176	-				-0.3
3,582,176	-				-1.1
3,582,176	-				-1.4
3,582,176	-				-0.7
3,582,179	+				-1.2
3,582,179	+				-2.5
3,582,179	+				-0.9
3,582,179	+				-3.9
3,582,179	+				-0.6
3,582,179	+				-2.2
3,582,179	+				-0.2
3,582,179	+				-4.3
3,582,179	+				-2.6
3,582,179	+				-2.2
3,582,179	+				+0.3
3,582,179	+				-1.5
3,582,179	+				-0.2
3,582,179	+				+0.6
3,582,179	+				-3.4
3,582,179	+				+0.4
3,582,179	+				-1.3
3,582,179	+				-1.6
3,582,180	-				-1.6
3,582,180	-				-0.9
3,582,180	-				-3.5
3,582,180	-				-1.2
3,582,180	-				-0.8
3,582,180	-				+0.0
3,582,180	-				-3.2
3,582,180	-				-1.3
3,582,180	-				-0.8
3,582,180	-				-1.6
3,582,180	-				-1.5
3,582,180	-				+0.5
3,582,180	-				-0.9
3,582,180	-				+1.4
3,582,180	-				-1.6
3,582,180	-				-1.9
3,582,180	-				-3.2
3,582,180	-				-4.6
3,582,180	-				+0.6
3,582,180	-				-1.2
3,582,180	-				-3.4
3,582,180	-				+0.4
3,582,180	-				+0.2
3,582,180	-				-0.6
3,582,403	+		ABIE53_003169	0.15	-4.8
3,582,404	-		ABIE53_003169	0.15	-2.4
3,582,524	+		ABIE53_003169	0.23	-1.9
3,582,524	+		ABIE53_003169	0.23	-1.9
3,582,525	-		ABIE53_003169	0.23	-2.4