Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000769

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000768 and ABIE53_000769 are separated by 34 nucleotidesABIE53_000769 and ABIE53_000770 are separated by 84 nucleotidesABIE53_000770 and ABIE53_000771 are separated by 67 nucleotides ABIE53_000768: ABIE53_000768 - FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase, at 828,098 to 832,192 _000768 ABIE53_000769: ABIE53_000769 - diadenosine tetraphosphate (Ap4A) HIT family hydrolase, at 832,227 to 832,655 _000769 ABIE53_000770: ABIE53_000770 - DUF971 family protein, at 832,740 to 833,153 _000770 ABIE53_000771: ABIE53_000771 - demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, at 833,221 to 833,952 _000771 Position (kb) 832 833Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 831.293 kb on + strand, within ABIE53_000768at 831.293 kb on + strand, within ABIE53_000768at 831.294 kb on - strand, within ABIE53_000768at 831.294 kb on - strand, within ABIE53_000768at 831.339 kb on + strand, within ABIE53_000768at 831.493 kb on + strand, within ABIE53_000768at 831.494 kb on - strand, within ABIE53_000768at 831.494 kb on - strand, within ABIE53_000768at 831.494 kb on - strand, within ABIE53_000768at 831.503 kb on + strand, within ABIE53_000768at 831.503 kb on + strand, within ABIE53_000768at 831.662 kb on + strand, within ABIE53_000768at 831.662 kb on + strand, within ABIE53_000768at 831.662 kb on + strand, within ABIE53_000768at 831.662 kb on + strand, within ABIE53_000768at 831.663 kb on - strand, within ABIE53_000768at 831.663 kb on - strand, within ABIE53_000768at 831.663 kb on - strand, within ABIE53_000768at 831.663 kb on - strand, within ABIE53_000768at 831.663 kb on - strand, within ABIE53_000768at 831.663 kb on - strand, within ABIE53_000768at 831.663 kb on - strand, within ABIE53_000768at 831.668 kb on + strand, within ABIE53_000768at 831.668 kb on + strand, within ABIE53_000768at 831.668 kb on + strand, within ABIE53_000768at 831.669 kb on - strand, within ABIE53_000768at 831.669 kb on - strand, within ABIE53_000768at 831.669 kb on - strand, within ABIE53_000768at 831.669 kb on - strand, within ABIE53_000768at 831.752 kb on + strand, within ABIE53_000768at 831.753 kb on - strand, within ABIE53_000768at 831.753 kb on - strand, within ABIE53_000768at 832.062 kb on - strandat 832.092 kb on - strandat 832.092 kb on - strandat 832.092 kb on - strandat 832.145 kb on + strandat 832.145 kb on + strandat 832.145 kb on + strandat 832.145 kb on + strandat 832.146 kb on - strandat 832.190 kb on + strandat 832.190 kb on + strandat 832.191 kb on - strandat 832.191 kb on - strandat 832.351 kb on + strand, within ABIE53_000769at 832.352 kb on - strand, within ABIE53_000769at 832.352 kb on - strand, within ABIE53_000769at 832.352 kb on - strand, within ABIE53_000769at 832.407 kb on + strand, within ABIE53_000769at 832.407 kb on + strand, within ABIE53_000769at 832.407 kb on + strand, within ABIE53_000769at 832.407 kb on + strand, within ABIE53_000769at 832.407 kb on + strand, within ABIE53_000769at 832.407 kb on + strand, within ABIE53_000769at 832.407 kb on + strand, within ABIE53_000769at 832.407 kb on + strand, within ABIE53_000769at 832.408 kb on - strand, within ABIE53_000769at 832.408 kb on - strand, within ABIE53_000769at 832.408 kb on - strand, within ABIE53_000769at 832.408 kb on - strand, within ABIE53_000769at 832.408 kb on - strand, within ABIE53_000769at 832.408 kb on - strand, within ABIE53_000769at 832.408 kb on - strand, within ABIE53_000769at 832.408 kb on - strand, within ABIE53_000769at 832.719 kb on + strandat 832.719 kb on + strandat 832.719 kb on + strandat 832.719 kb on + strandat 832.727 kb on + strandat 832.727 kb on + strandat 832.727 kb on + strandat 832.727 kb on + strandat 832.727 kb on + strandat 832.727 kb on + strandat 832.727 kb on + strandat 832.727 kb on + strandat 832.727 kb on + strandat 832.727 kb on + strandat 832.727 kb on + strandat 832.728 kb on - strandat 832.728 kb on - strandat 832.728 kb on - strandat 832.728 kb on - strandat 832.866 kb on + strand, within ABIE53_000770at 832.866 kb on + strand, within ABIE53_000770at 832.866 kb on + strand, within ABIE53_000770at 832.866 kb on + strand, within ABIE53_000770at 832.866 kb on + strand, within ABIE53_000770at 832.866 kb on + strand, within ABIE53_000770at 832.867 kb on - strand, within ABIE53_000770at 832.867 kb on - strand, within ABIE53_000770at 832.867 kb on - strand, within ABIE53_000770at 832.885 kb on + strand, within ABIE53_000770at 832.885 kb on + strand, within ABIE53_000770at 832.885 kb on + strand, within ABIE53_000770at 832.885 kb on + strand, within ABIE53_000770at 832.886 kb on - strand, within ABIE53_000770at 832.886 kb on - strand, within ABIE53_000770at 832.886 kb on - strand, within ABIE53_000770at 832.968 kb on + strand, within ABIE53_000770at 832.968 kb on + strand, within ABIE53_000770at 832.968 kb on + strand, within ABIE53_000770at 832.968 kb on + strand, within ABIE53_000770at 832.968 kb on + strand, within ABIE53_000770at 832.968 kb on + strand, within ABIE53_000770at 832.968 kb on + strand, within ABIE53_000770at 832.968 kb on + strand, within ABIE53_000770at 832.968 kb on + strand, within ABIE53_000770at 832.969 kb on - strand, within ABIE53_000770at 832.969 kb on - strand, within ABIE53_000770at 832.969 kb on - strand, within ABIE53_000770at 832.969 kb on - strand, within ABIE53_000770at 832.969 kb on - strand, within ABIE53_000770at 832.969 kb on - strand, within ABIE53_000770at 832.969 kb on - strand, within ABIE53_000770at 832.969 kb on - strand, within ABIE53_000770at 832.969 kb on - strand, within ABIE53_000770at 832.969 kb on - strand, within ABIE53_000770at 832.969 kb on - strand, within ABIE53_000770at 833.013 kb on + strand, within ABIE53_000770at 833.013 kb on + strand, within ABIE53_000770at 833.013 kb on + strand, within ABIE53_000770at 833.013 kb on + strand, within ABIE53_000770at 833.013 kb on + strand, within ABIE53_000770at 833.013 kb on + strand, within ABIE53_000770at 833.013 kb on + strand, within ABIE53_000770at 833.013 kb on + strand, within ABIE53_000770at 833.013 kb on + strand, within ABIE53_000770at 833.013 kb on + strand, within ABIE53_000770at 833.013 kb on + strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.014 kb on - strand, within ABIE53_000770at 833.031 kb on + strand, within ABIE53_000770at 833.070 kb on + strand, within ABIE53_000770at 833.070 kb on + strand, within ABIE53_000770at 833.070 kb on + strand, within ABIE53_000770at 833.071 kb on - strand, within ABIE53_000770at 833.071 kb on - strand, within ABIE53_000770at 833.108 kb on + strand, within ABIE53_000770at 833.108 kb on + strand, within ABIE53_000770at 833.109 kb on - strand, within ABIE53_000770at 833.154 kb on + strandat 833.154 kb on + strandat 833.154 kb on + strandat 833.154 kb on + strandat 833.154 kb on + strandat 833.155 kb on - strandat 833.155 kb on - strandat 833.189 kb on + strandat 833.189 kb on + strandat 833.189 kb on + strandat 833.189 kb on + strandat 833.189 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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831,293 + ABIE53_000768 0.78 -1.4
831,293 + ABIE53_000768 0.78 +0.3
831,294 - ABIE53_000768 0.78 -2.5
831,294 - ABIE53_000768 0.78 -1.8
831,339 + ABIE53_000768 0.79 -3.3
831,493 + ABIE53_000768 0.83 -3.4
831,494 - ABIE53_000768 0.83 -0.2
831,494 - ABIE53_000768 0.83 -0.7
831,494 - ABIE53_000768 0.83 -1.0
831,503 + ABIE53_000768 0.83 -0.6
831,503 + ABIE53_000768 0.83 -1.5
831,662 + ABIE53_000768 0.87 -1.0
831,662 + ABIE53_000768 0.87 -0.6
831,662 + ABIE53_000768 0.87 -1.5
831,662 + ABIE53_000768 0.87 -1.2
831,663 - ABIE53_000768 0.87 -0.2
831,663 - ABIE53_000768 0.87 -2.1
831,663 - ABIE53_000768 0.87 -2.0
831,663 - ABIE53_000768 0.87 -4.1
831,663 - ABIE53_000768 0.87 -0.2
831,663 - ABIE53_000768 0.87 -0.6
831,663 - ABIE53_000768 0.87 -2.0
831,668 + ABIE53_000768 0.87 -0.2
831,668 + ABIE53_000768 0.87 -1.0
831,668 + ABIE53_000768 0.87 -4.3
831,669 - ABIE53_000768 0.87 -2.0
831,669 - ABIE53_000768 0.87 -3.7
831,669 - ABIE53_000768 0.87 -1.0
831,669 - ABIE53_000768 0.87 -2.6
831,752 + ABIE53_000768 0.89 -3.7
831,753 - ABIE53_000768 0.89 -0.6
831,753 - ABIE53_000768 0.89 -3.6
832,062 - -0.6
832,092 - +0.4
832,092 - -0.2
832,092 - -0.6
832,145 + -0.6
832,145 + +1.4
832,145 + +0.4
832,145 + -0.2
832,146 - -1.6
832,190 + +1.0
832,190 + -0.2
832,191 - +0.3
832,191 - +0.6
832,351 + ABIE53_000769 0.29 +0.4
832,352 - ABIE53_000769 0.29 -2.7
832,352 - ABIE53_000769 0.29 -1.0
832,352 - ABIE53_000769 0.29 +0.4
832,407 + ABIE53_000769 0.42 +0.5
832,407 + ABIE53_000769 0.42 -1.0
832,407 + ABIE53_000769 0.42 -0.2
832,407 + ABIE53_000769 0.42 +1.2
832,407 + ABIE53_000769 0.42 -0.2
832,407 + ABIE53_000769 0.42 +0.9
832,407 + ABIE53_000769 0.42 +0.6
832,407 + ABIE53_000769 0.42 -0.4
832,408 - ABIE53_000769 0.42 -0.3
832,408 - ABIE53_000769 0.42 -2.2
832,408 - ABIE53_000769 0.42 -0.6
832,408 - ABIE53_000769 0.42 +1.0
832,408 - ABIE53_000769 0.42 -3.2
832,408 - ABIE53_000769 0.42 -2.5
832,408 - ABIE53_000769 0.42 -1.2
832,408 - ABIE53_000769 0.42 -1.0
832,719 + +2.2
832,719 + +0.9
832,719 + +0.9
832,719 + +3.4
832,727 + +0.4
832,727 + +1.4
832,727 + -1.2
832,727 + +2.9
832,727 + +2.4
832,727 + +0.2
832,727 + -0.4
832,727 + -1.2
832,727 + -1.3
832,727 + -2.2
832,727 + -2.3
832,728 - -0.0
832,728 - -0.8
832,728 - -0.6
832,728 - -1.0
832,866 + ABIE53_000770 0.30 -0.6
832,866 + ABIE53_000770 0.30 -3.7
832,866 + ABIE53_000770 0.30 -1.2
832,866 + ABIE53_000770 0.30 -2.8
832,866 + ABIE53_000770 0.30 +0.8
832,866 + ABIE53_000770 0.30 +0.4
832,867 - ABIE53_000770 0.31 +1.1
832,867 - ABIE53_000770 0.31 -2.0
832,867 - ABIE53_000770 0.31 -0.2
832,885 + ABIE53_000770 0.35 +2.2
832,885 + ABIE53_000770 0.35 -1.8
832,885 + ABIE53_000770 0.35 -0.6
832,885 + ABIE53_000770 0.35 +0.4
832,886 - ABIE53_000770 0.35 +1.9
832,886 - ABIE53_000770 0.35 -2.7
832,886 - ABIE53_000770 0.35 -2.6
832,968 + ABIE53_000770 0.55 -0.0
832,968 + ABIE53_000770 0.55 +0.5
832,968 + ABIE53_000770 0.55 -2.2
832,968 + ABIE53_000770 0.55 +0.9
832,968 + ABIE53_000770 0.55 +2.6
832,968 + ABIE53_000770 0.55 +1.7
832,968 + ABIE53_000770 0.55 -1.0
832,968 + ABIE53_000770 0.55 +2.9
832,968 + ABIE53_000770 0.55 +1.2
832,969 - ABIE53_000770 0.55 -1.4
832,969 - ABIE53_000770 0.55 +0.4
832,969 - ABIE53_000770 0.55 +0.1
832,969 - ABIE53_000770 0.55 -0.4
832,969 - ABIE53_000770 0.55 -0.1
832,969 - ABIE53_000770 0.55 -1.2
832,969 - ABIE53_000770 0.55 -2.3
832,969 - ABIE53_000770 0.55 -1.2
832,969 - ABIE53_000770 0.55 -1.2
832,969 - ABIE53_000770 0.55 -1.6
832,969 - ABIE53_000770 0.55 +1.4
833,013 + ABIE53_000770 0.66 +3.2
833,013 + ABIE53_000770 0.66 +0.6
833,013 + ABIE53_000770 0.66 +0.7
833,013 + ABIE53_000770 0.66 +0.4
833,013 + ABIE53_000770 0.66 +1.2
833,013 + ABIE53_000770 0.66 +0.9
833,013 + ABIE53_000770 0.66 -1.5
833,013 + ABIE53_000770 0.66 +0.4
833,013 + ABIE53_000770 0.66 +1.4
833,013 + ABIE53_000770 0.66 +2.8
833,013 + ABIE53_000770 0.66 -2.2
833,014 - ABIE53_000770 0.66 +0.6
833,014 - ABIE53_000770 0.66 -0.5
833,014 - ABIE53_000770 0.66 -0.2
833,014 - ABIE53_000770 0.66 +1.4
833,014 - ABIE53_000770 0.66 -1.5
833,014 - ABIE53_000770 0.66 -1.6
833,014 - ABIE53_000770 0.66 -0.3
833,014 - ABIE53_000770 0.66 +0.3
833,014 - ABIE53_000770 0.66 +0.4
833,014 - ABIE53_000770 0.66 +0.0
833,014 - ABIE53_000770 0.66 +0.6
833,014 - ABIE53_000770 0.66 +0.5
833,014 - ABIE53_000770 0.66 +0.1
833,031 + ABIE53_000770 0.70 -1.6
833,070 + ABIE53_000770 0.80 -1.0
833,070 + ABIE53_000770 0.80 +1.9
833,070 + ABIE53_000770 0.80 +0.9
833,071 - ABIE53_000770 0.80 -2.1
833,071 - ABIE53_000770 0.80 -1.0
833,108 + ABIE53_000770 0.89 +0.5
833,108 + ABIE53_000770 0.89 -2.3
833,109 - ABIE53_000770 0.89 +1.8
833,154 + -0.9
833,154 + +0.6
833,154 + +0.8
833,154 + +1.5
833,154 + +1.4
833,155 - -2.0
833,155 - -1.6
833,189 + +3.1
833,189 + -1.0
833,189 + +2.2
833,189 + +1.4
833,189 + -0.2

Or see this region's nucleotide sequence