Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000361

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000360 and ABIE53_000361 overlap by 4 nucleotidesABIE53_000361 and ABIE53_000362 are separated by 8 nucleotidesABIE53_000362 and ABIE53_000363 are separated by 73 nucleotides ABIE53_000360: ABIE53_000360 - ethanolamine ammonia-lyase large subunit, at 387,279 to 388,673 _000360 ABIE53_000361: ABIE53_000361 - ethanolamine ammonia-lyase small subunit, at 388,670 to 389,485 _000361 ABIE53_000362: ABIE53_000362 - uncharacterized protein (DUF779 family), at 389,494 to 389,889 _000362 ABIE53_000363: ABIE53_000363 - aldehyde dehydrogenase, at 389,963 to 391,483 _000363 Position (kb) 388 389 390Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 387.825 kb on + strand, within ABIE53_000360at 387.825 kb on + strand, within ABIE53_000360at 387.825 kb on + strand, within ABIE53_000360at 387.825 kb on + strand, within ABIE53_000360at 387.826 kb on - strand, within ABIE53_000360at 387.826 kb on - strand, within ABIE53_000360at 387.924 kb on + strand, within ABIE53_000360at 387.925 kb on - strand, within ABIE53_000360at 388.070 kb on - strand, within ABIE53_000360at 388.083 kb on + strand, within ABIE53_000360at 388.083 kb on + strand, within ABIE53_000360at 388.083 kb on + strand, within ABIE53_000360at 388.083 kb on + strand, within ABIE53_000360at 388.084 kb on - strand, within ABIE53_000360at 388.084 kb on - strand, within ABIE53_000360at 388.134 kb on + strand, within ABIE53_000360at 388.134 kb on + strand, within ABIE53_000360at 388.135 kb on - strand, within ABIE53_000360at 388.215 kb on + strand, within ABIE53_000360at 388.253 kb on + strand, within ABIE53_000360at 388.253 kb on + strand, within ABIE53_000360at 388.254 kb on - strand, within ABIE53_000360at 388.282 kb on - strand, within ABIE53_000360at 388.282 kb on - strand, within ABIE53_000360at 388.282 kb on - strand, within ABIE53_000360at 388.287 kb on + strand, within ABIE53_000360at 388.288 kb on - strand, within ABIE53_000360at 388.492 kb on - strand, within ABIE53_000360at 388.521 kb on + strand, within ABIE53_000360at 388.521 kb on + strand, within ABIE53_000360at 388.522 kb on - strand, within ABIE53_000360at 388.522 kb on - strand, within ABIE53_000360at 388.522 kb on - strand, within ABIE53_000360at 388.522 kb on - strand, within ABIE53_000360at 388.534 kb on + strandat 388.773 kb on + strand, within ABIE53_000361at 388.773 kb on + strand, within ABIE53_000361at 388.913 kb on + strand, within ABIE53_000361at 388.913 kb on + strand, within ABIE53_000361at 389.059 kb on - strand, within ABIE53_000361at 389.206 kb on + strand, within ABIE53_000361at 389.206 kb on + strand, within ABIE53_000361at 389.206 kb on + strand, within ABIE53_000361at 389.207 kb on - strand, within ABIE53_000361at 389.207 kb on - strand, within ABIE53_000361at 389.231 kb on + strand, within ABIE53_000361at 389.232 kb on - strand, within ABIE53_000361at 389.232 kb on - strand, within ABIE53_000361at 389.240 kb on + strand, within ABIE53_000361at 389.241 kb on - strand, within ABIE53_000361at 389.241 kb on - strand, within ABIE53_000361at 389.241 kb on - strand, within ABIE53_000361at 389.339 kb on + strand, within ABIE53_000361at 389.339 kb on + strand, within ABIE53_000361at 389.340 kb on - strand, within ABIE53_000361at 389.340 kb on - strand, within ABIE53_000361at 389.340 kb on - strand, within ABIE53_000361at 389.478 kb on + strandat 389.479 kb on - strandat 389.483 kb on + strandat 389.607 kb on + strand, within ABIE53_000362at 389.634 kb on + strand, within ABIE53_000362at 389.681 kb on + strand, within ABIE53_000362at 389.681 kb on + strand, within ABIE53_000362at 389.681 kb on + strand, within ABIE53_000362at 389.681 kb on + strand, within ABIE53_000362at 389.682 kb on - strand, within ABIE53_000362at 389.800 kb on + strand, within ABIE53_000362at 389.800 kb on + strand, within ABIE53_000362at 389.800 kb on + strand, within ABIE53_000362at 389.800 kb on + strand, within ABIE53_000362at 389.801 kb on - strand, within ABIE53_000362at 389.801 kb on - strand, within ABIE53_000362at 389.893 kb on + strandat 389.893 kb on + strandat 389.894 kb on - strandat 389.894 kb on - strandat 389.894 kb on - strandat 389.894 kb on - strandat 389.894 kb on - strandat 389.909 kb on + strandat 389.910 kb on - strandat 389.941 kb on + strandat 389.942 kb on - strandat 389.942 kb on - strandat 389.964 kb on + strandat 389.965 kb on - strandat 389.989 kb on + strandat 389.989 kb on + strandat 389.989 kb on + strandat 389.990 kb on - strandat 389.991 kb on + strandat 389.991 kb on + strandat 389.991 kb on + strandat 389.992 kb on - strandat 389.992 kb on - strandat 389.992 kb on - strandat 390.022 kb on - strandat 390.099 kb on + strandat 390.109 kb on - strandat 390.200 kb on + strand, within ABIE53_000363at 390.202 kb on - strand, within ABIE53_000363at 390.305 kb on - strand, within ABIE53_000363at 390.333 kb on + strand, within ABIE53_000363at 390.334 kb on - strand, within ABIE53_000363at 390.334 kb on - strand, within ABIE53_000363at 390.336 kb on + strand, within ABIE53_000363at 390.420 kb on + strand, within ABIE53_000363at 390.420 kb on + strand, within ABIE53_000363at 390.420 kb on + strand, within ABIE53_000363at 390.421 kb on - strand, within ABIE53_000363at 390.421 kb on - strand, within ABIE53_000363

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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387,825 + ABIE53_000360 0.39 -3.4
387,825 + ABIE53_000360 0.39 -0.3
387,825 + ABIE53_000360 0.39 +2.1
387,825 + ABIE53_000360 0.39 -0.3
387,826 - ABIE53_000360 0.39 -1.1
387,826 - ABIE53_000360 0.39 +0.3
387,924 + ABIE53_000360 0.46 -2.6
387,925 - ABIE53_000360 0.46 +1.9
388,070 - ABIE53_000360 0.57 +0.3
388,083 + ABIE53_000360 0.58 -0.1
388,083 + ABIE53_000360 0.58 +0.1
388,083 + ABIE53_000360 0.58 -0.2
388,083 + ABIE53_000360 0.58 +0.9
388,084 - ABIE53_000360 0.58 -1.4
388,084 - ABIE53_000360 0.58 -3.0
388,134 + ABIE53_000360 0.61 +0.4
388,134 + ABIE53_000360 0.61 +1.3
388,135 - ABIE53_000360 0.61 -1.6
388,215 + ABIE53_000360 0.67 +0.3
388,253 + ABIE53_000360 0.70 -3.2
388,253 + ABIE53_000360 0.70 +0.4
388,254 - ABIE53_000360 0.70 +1.7
388,282 - ABIE53_000360 0.72 -1.1
388,282 - ABIE53_000360 0.72 -1.3
388,282 - ABIE53_000360 0.72 +0.1
388,287 + ABIE53_000360 0.72 -0.5
388,288 - ABIE53_000360 0.72 +0.2
388,492 - ABIE53_000360 0.87 +0.3
388,521 + ABIE53_000360 0.89 +0.1
388,521 + ABIE53_000360 0.89 -1.1
388,522 - ABIE53_000360 0.89 -1.9
388,522 - ABIE53_000360 0.89 +0.3
388,522 - ABIE53_000360 0.89 -0.2
388,522 - ABIE53_000360 0.89 +0.3
388,534 + +0.3
388,773 + ABIE53_000361 0.13 -1.9
388,773 + ABIE53_000361 0.13 +0.1
388,913 + ABIE53_000361 0.30 +1.1
388,913 + ABIE53_000361 0.30 +1.9
389,059 - ABIE53_000361 0.48 -2.2
389,206 + ABIE53_000361 0.66 -1.7
389,206 + ABIE53_000361 0.66 +0.3
389,206 + ABIE53_000361 0.66 -1.3
389,207 - ABIE53_000361 0.66 -1.3
389,207 - ABIE53_000361 0.66 +0.7
389,231 + ABIE53_000361 0.69 -0.6
389,232 - ABIE53_000361 0.69 +1.4
389,232 - ABIE53_000361 0.69 -1.1
389,240 + ABIE53_000361 0.70 -3.1
389,241 - ABIE53_000361 0.70 +3.6
389,241 - ABIE53_000361 0.70 +0.3
389,241 - ABIE53_000361 0.70 -2.1
389,339 + ABIE53_000361 0.82 +0.3
389,339 + ABIE53_000361 0.82 -0.7
389,340 - ABIE53_000361 0.82 +3.4
389,340 - ABIE53_000361 0.82 -2.3
389,340 - ABIE53_000361 0.82 -0.7
389,478 + -1.1
389,479 - -1.5
389,483 + +0.1
389,607 + ABIE53_000362 0.29 -1.1
389,634 + ABIE53_000362 0.35 -0.3
389,681 + ABIE53_000362 0.47 -1.9
389,681 + ABIE53_000362 0.47 +0.7
389,681 + ABIE53_000362 0.47 -0.7
389,681 + ABIE53_000362 0.47 -2.1
389,682 - ABIE53_000362 0.47 -3.1
389,800 + ABIE53_000362 0.77 -0.9
389,800 + ABIE53_000362 0.77 +1.5
389,800 + ABIE53_000362 0.77 -0.7
389,800 + ABIE53_000362 0.77 -0.3
389,801 - ABIE53_000362 0.78 +0.3
389,801 - ABIE53_000362 0.78 -0.1
389,893 + -3.3
389,893 + -2.2
389,894 - +0.3
389,894 - -0.1
389,894 - -2.8
389,894 - -0.3
389,894 - -1.3
389,909 + -0.6
389,910 - -1.7
389,941 + -0.7
389,942 - +0.3
389,942 - +1.3
389,964 + +0.3
389,965 - +0.8
389,989 + -3.0
389,989 + -0.7
389,989 + -0.7
389,990 - -2.2
389,991 + -0.3
389,991 + -0.2
389,991 + -2.3
389,992 - -4.1
389,992 - -2.1
389,992 - -3.1
390,022 - -1.7
390,099 + -0.7
390,109 - -1.3
390,200 + ABIE53_000363 0.16 -0.7
390,202 - ABIE53_000363 0.16 -1.3
390,305 - ABIE53_000363 0.22 -4.4
390,333 + ABIE53_000363 0.24 -1.9
390,334 - ABIE53_000363 0.24 -1.1
390,334 - ABIE53_000363 0.24 -5.1
390,336 + ABIE53_000363 0.25 -0.2
390,420 + ABIE53_000363 0.30 -3.1
390,420 + ABIE53_000363 0.30 -1.7
390,420 + ABIE53_000363 0.30 -3.3
390,421 - ABIE53_000363 0.30 -5.9
390,421 - ABIE53_000363 0.30 -2.6

Or see this region's nucleotide sequence