Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000253 and ABIE53_000254 are separated by 13 nucleotides ABIE53_000254 and ABIE53_000255 are separated by 58 nucleotides ABIE53_000255 and ABIE53_000256 are separated by 2 nucleotides ABIE53_000256 and ABIE53_000257 overlap by 38 nucleotides ABIE53_000257 and ABIE53_000258 are separated by 135 nucleotides ABIE53_000258 and ABIE53_000259 are separated by 81 nucleotides
ABIE53_000253: ABIE53_000253 - F-type H+-transporting ATPase subunit alpha, at 270,129 to 271,451
_000253
ABIE53_000254: ABIE53_000254 - F0F1-type ATP synthase alpha subunit, at 271,465 to 271,671
_000254
ABIE53_000255: ABIE53_000255 - F-type H+-transporting ATPase subunit delta, at 271,730 to 272,269
_000255
ABIE53_000256: ABIE53_000256 - ATP synthase F0 subunit b, at 272,272 to 272,517
_000256
ABIE53_000257: ABIE53_000257 - ATP synthase F0 subunit b, at 272,480 to 272,743
_000257
ABIE53_000258: ABIE53_000258 - F-type H+-transporting ATPase subunit c, at 272,879 to 273,148
_000258
ABIE53_000259: ABIE53_000259 - F-type H+-transporting ATPase subunit a, at 273,230 to 274,054
_000259
Position (kb)
272
273 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 271.686 kb on - strand at 272.765 kb on - strand at 272.765 kb on - strand at 272.765 kb on - strand at 272.765 kb on - strand at 272.765 kb on - strand at 272.850 kb on - strand at 272.852 kb on - strand at 272.852 kb on - strand at 272.852 kb on - strand at 273.175 kb on - strand at 273.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 271,686 - +1.3 272,765 - -2.9 272,765 - -0.9 272,765 - -0.3 272,765 - -1.7 272,765 - -3.4 272,850 - -0.7 272,852 - +0.1 272,852 - -0.6 272,852 - -0.6 273,175 - -2.4 273,175 - -2.2
Or see this region's nucleotide sequence