Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000256

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE53_000253 and ABIE53_000254 are separated by 13 nucleotidesABIE53_000254 and ABIE53_000255 are separated by 58 nucleotidesABIE53_000255 and ABIE53_000256 are separated by 2 nucleotidesABIE53_000256 and ABIE53_000257 overlap by 38 nucleotidesABIE53_000257 and ABIE53_000258 are separated by 135 nucleotidesABIE53_000258 and ABIE53_000259 are separated by 81 nucleotides ABIE53_000253: ABIE53_000253 - F-type H+-transporting ATPase subunit alpha, at 270,129 to 271,451 _000253 ABIE53_000254: ABIE53_000254 - F0F1-type ATP synthase alpha subunit, at 271,465 to 271,671 _000254 ABIE53_000255: ABIE53_000255 - F-type H+-transporting ATPase subunit delta, at 271,730 to 272,269 _000255 ABIE53_000256: ABIE53_000256 - ATP synthase F0 subunit b, at 272,272 to 272,517 _000256 ABIE53_000257: ABIE53_000257 - ATP synthase F0 subunit b, at 272,480 to 272,743 _000257 ABIE53_000258: ABIE53_000258 - F-type H+-transporting ATPase subunit c, at 272,879 to 273,148 _000258 ABIE53_000259: ABIE53_000259 - F-type H+-transporting ATPase subunit a, at 273,230 to 274,054 _000259 Position (kb) 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1at 271.686 kb on - strandat 272.765 kb on - strandat 272.765 kb on - strandat 272.765 kb on - strandat 272.765 kb on - strandat 272.765 kb on - strandat 272.850 kb on - strandat 272.852 kb on - strandat 272.852 kb on - strandat 272.852 kb on - strandat 273.175 kb on - strandat 273.175 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
remove
271,686 - +1.3
272,765 - -2.9
272,765 - -0.9
272,765 - -0.3
272,765 - -1.7
272,765 - -3.4
272,850 - -0.7
272,852 - +0.1
272,852 - -0.6
272,852 - -0.6
273,175 - -2.4
273,175 - -2.2

Or see this region's nucleotide sequence