Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3046

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3045 and DvMF_3046 are separated by 355 nucleotidesDvMF_3046 and DvMF_3047 are separated by 378 nucleotides DvMF_3045: DvMF_3045 - hypothetical protein (RefSeq), at 3,842,707 to 3,843,156 _3045 DvMF_3046: DvMF_3046 - cobalbumin biosynthesis protein (RefSeq), at 3,843,512 to 3,844,156 _3046 DvMF_3047: DvMF_3047 - hypothetical protein (RefSeq), at 3,844,535 to 3,845,275 _3047 Position (kb) 3843 3844 3845Strain fitness (log2 ratio) -3 -2 -1 0 1at 3842.757 kb on + strand, within DvMF_3045at 3842.791 kb on + strand, within DvMF_3045at 3842.908 kb on - strand, within DvMF_3045at 3843.026 kb on - strand, within DvMF_3045at 3843.186 kb on - strandat 3843.186 kb on - strandat 3843.298 kb on - strandat 3843.365 kb on + strandat 3843.380 kb on + strandat 3843.380 kb on + strandat 3843.395 kb on + strandat 3843.398 kb on - strandat 3843.423 kb on - strandat 3843.623 kb on + strand, within DvMF_3046at 3843.814 kb on - strand, within DvMF_3046at 3843.885 kb on + strand, within DvMF_3046at 3843.927 kb on + strand, within DvMF_3046at 3844.298 kb on - strandat 3844.449 kb on - strandat 3844.522 kb on - strandat 3844.626 kb on + strand, within DvMF_3047at 3844.626 kb on + strand, within DvMF_3047at 3844.764 kb on - strand, within DvMF_3047at 3844.788 kb on + strand, within DvMF_3047at 3844.886 kb on + strand, within DvMF_3047at 3844.903 kb on + strand, within DvMF_3047at 3845.083 kb on - strand, within DvMF_3047

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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3,842,757 + DvMF_3045 0.11 +1.4
3,842,791 + DvMF_3045 0.19 -0.7
3,842,908 - DvMF_3045 0.45 +0.6
3,843,026 - DvMF_3045 0.71 +0.1
3,843,186 - -0.2
3,843,186 - -0.7
3,843,298 - +1.6
3,843,365 + -0.4
3,843,380 + -1.1
3,843,380 + -0.6
3,843,395 + -0.8
3,843,398 - -0.3
3,843,423 - -2.0
3,843,623 + DvMF_3046 0.17 -2.6
3,843,814 - DvMF_3046 0.47 +0.5
3,843,885 + DvMF_3046 0.58 -3.0
3,843,927 + DvMF_3046 0.64 -0.5
3,844,298 - -0.2
3,844,449 - +0.5
3,844,522 - -1.1
3,844,626 + DvMF_3047 0.12 -0.8
3,844,626 + DvMF_3047 0.12 +1.0
3,844,764 - DvMF_3047 0.31 -0.5
3,844,788 + DvMF_3047 0.34 -0.0
3,844,886 + DvMF_3047 0.47 +0.3
3,844,903 + DvMF_3047 0.50 -0.5
3,845,083 - DvMF_3047 0.74 -0.4

Or see this region's nucleotide sequence