Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2774

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2773 and DvMF_2774 are separated by 327 nucleotidesDvMF_2774 and DvMF_2775 are separated by 414 nucleotides DvMF_2773: DvMF_2773 - Extracellular ligand-binding receptor (RefSeq), at 3,507,495 to 3,508,736 _2773 DvMF_2774: DvMF_2774 - AMMECR1 domain protein (RefSeq), at 3,509,064 to 3,509,765 _2774 DvMF_2775: DvMF_2775 - major facilitator superfamily MFS_1 (RefSeq), at 3,510,180 to 3,511,346 _2775 Position (kb) 3509 3510Strain fitness (log2 ratio) -1 0 1at 3508.120 kb on + strand, within DvMF_2773at 3508.147 kb on + strandat 3508.408 kb on - strand, within DvMF_2773at 3508.505 kb on - strand, within DvMF_2773at 3508.532 kb on - strand, within DvMF_2773at 3508.824 kb on - strandat 3508.843 kb on + strandat 3509.047 kb on + strandat 3509.047 kb on + strandat 3509.164 kb on + strand, within DvMF_2774at 3509.245 kb on + strand, within DvMF_2774at 3509.411 kb on - strand, within DvMF_2774at 3509.450 kb on - strand, within DvMF_2774at 3509.742 kb on - strandat 3509.794 kb on + strandat 3509.884 kb on - strandat 3510.272 kb on + strandat 3510.337 kb on + strand, within DvMF_2775at 3510.576 kb on - strand, within DvMF_2775

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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3,508,120 + DvMF_2773 0.50 +0.4
3,508,147 + +1.5
3,508,408 - DvMF_2773 0.74 -0.8
3,508,505 - DvMF_2773 0.81 -0.4
3,508,532 - DvMF_2773 0.83 -0.5
3,508,824 - -1.1
3,508,843 + -0.7
3,509,047 + -0.7
3,509,047 + -0.3
3,509,164 + DvMF_2774 0.14 -0.3
3,509,245 + DvMF_2774 0.26 -0.2
3,509,411 - DvMF_2774 0.49 -0.5
3,509,450 - DvMF_2774 0.55 -0.4
3,509,742 - -0.6
3,509,794 + -0.9
3,509,884 - -0.3
3,510,272 + -0.8
3,510,337 + DvMF_2775 0.13 -1.5
3,510,576 - DvMF_2775 0.34 -1.2

Or see this region's nucleotide sequence