Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2764 and valS are separated by 217 nucleotides valS and DvMF_2766 are separated by 383 nucleotides DvMF_2766 and DvMF_2767 are separated by 93 nucleotides
DvMF_2764: DvMF_2764 - hypothetical protein (RefSeq), at 3,495,758 to 3,497,035
_2764
DvMF_2765: valS - valyl-tRNA synthetase (RefSeq), at 3,497,253 to 3,499,904
valS
DvMF_2766: DvMF_2766 - hypothetical protein (RefSeq), at 3,500,288 to 3,500,746
_2766
DvMF_2767: DvMF_2767 - uroporphyrin-III C-methyltransferase (RefSeq), at 3,500,840 to 3,502,351
_2767
Position (kb)
3497
3498
3499
3500 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3496.558 kb on - strand, within DvMF_2764 at 3496.656 kb on + strand, within DvMF_2764 at 3496.735 kb on + strand, within DvMF_2764 at 3496.735 kb on + strand, within DvMF_2764 at 3496.735 kb on + strand, within DvMF_2764 at 3496.743 kb on - strand, within DvMF_2764 at 3496.854 kb on + strand, within DvMF_2764 at 3496.862 kb on - strand, within DvMF_2764 at 3496.964 kb on + strand at 3500.333 kb on + strand at 3500.426 kb on - strand, within DvMF_2766 at 3500.564 kb on + strand, within DvMF_2766 at 3500.683 kb on + strand, within DvMF_2766 at 3500.686 kb on - strand, within DvMF_2766
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 3,496,558 - DvMF_2764 0.63 -3.8 3,496,656 + DvMF_2764 0.70 -0.5 3,496,735 + DvMF_2764 0.76 +0.5 3,496,735 + DvMF_2764 0.76 -0.5 3,496,735 + DvMF_2764 0.76 -0.5 3,496,743 - DvMF_2764 0.77 -1.7 3,496,854 + DvMF_2764 0.86 -1.3 3,496,862 - DvMF_2764 0.86 -2.2 3,496,964 + -1.3 3,500,333 + -1.3 3,500,426 - DvMF_2766 0.30 -0.0 3,500,564 + DvMF_2766 0.60 +0.7 3,500,683 + DvMF_2766 0.86 -0.4 3,500,686 - DvMF_2766 0.87 -0.9
Or see this region's nucleotide sequence