Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2565

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2564 and DvMF_2565 are separated by 159 nucleotidesDvMF_2565 and DvMF_2566 are separated by 91 nucleotides DvMF_2564: DvMF_2564 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,239,471 to 3,241,990 _2564 DvMF_2565: DvMF_2565 - periplasmic phosphate binding protein (RefSeq), at 3,242,150 to 3,243,184 _2565 DvMF_2566: DvMF_2566 - phosphate ABC transporter, inner membrane subunit PstC (RefSeq), at 3,243,276 to 3,244,520 _2566 Position (kb) 3242 3243 3244Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3241.214 kb on + strand, within DvMF_2564at 3241.229 kb on + strand, within DvMF_2564at 3241.263 kb on - strand, within DvMF_2564at 3241.347 kb on + strand, within DvMF_2564at 3241.469 kb on - strand, within DvMF_2564at 3241.609 kb on + strand, within DvMF_2564at 3242.059 kb on + strandat 3242.060 kb on + strandat 3242.242 kb on + strandat 3242.390 kb on - strand, within DvMF_2565at 3242.622 kb on + strand, within DvMF_2565at 3243.046 kb on + strand, within DvMF_2565at 3243.054 kb on - strand, within DvMF_2565at 3243.140 kb on + strandat 3243.335 kb on + strandat 3243.335 kb on + strandat 3243.366 kb on - strandat 3243.456 kb on - strand, within DvMF_2566at 3243.511 kb on - strand, within DvMF_2566at 3243.610 kb on - strand, within DvMF_2566at 3243.637 kb on - strand, within DvMF_2566at 3243.637 kb on - strand, within DvMF_2566at 3243.898 kb on - strand, within DvMF_2566at 3243.984 kb on + strand, within DvMF_2566at 3243.992 kb on - strand, within DvMF_2566at 3244.116 kb on - strand, within DvMF_2566

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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3,241,214 + DvMF_2564 0.69 +0.1
3,241,229 + DvMF_2564 0.70 -0.6
3,241,263 - DvMF_2564 0.71 -0.4
3,241,347 + DvMF_2564 0.74 -1.2
3,241,469 - DvMF_2564 0.79 -0.8
3,241,609 + DvMF_2564 0.85 -0.6
3,242,059 + -1.1
3,242,060 + -1.0
3,242,242 + -2.3
3,242,390 - DvMF_2565 0.23 -1.9
3,242,622 + DvMF_2565 0.46 -1.9
3,243,046 + DvMF_2565 0.87 -2.0
3,243,054 - DvMF_2565 0.87 -4.0
3,243,140 + -4.1
3,243,335 + -1.8
3,243,335 + -1.7
3,243,366 - -2.2
3,243,456 - DvMF_2566 0.14 -1.2
3,243,511 - DvMF_2566 0.19 -3.6
3,243,610 - DvMF_2566 0.27 -1.5
3,243,637 - DvMF_2566 0.29 -1.1
3,243,637 - DvMF_2566 0.29 -1.2
3,243,898 - DvMF_2566 0.50 -2.2
3,243,984 + DvMF_2566 0.57 -2.5
3,243,992 - DvMF_2566 0.58 -2.6
3,244,116 - DvMF_2566 0.67 -2.0

Or see this region's nucleotide sequence