Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2450

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2449 and DvMF_2450 are separated by 96 nucleotidesDvMF_2450 and DvMF_2451 are separated by 81 nucleotides DvMF_2449: DvMF_2449 - formamidopyrimidine-DNA glycosylase (RefSeq), at 3,083,870 to 3,084,880 _2449 DvMF_2450: DvMF_2450 - ComEC/Rec2-related protein (RefSeq), at 3,084,977 to 3,088,279 _2450 DvMF_2451: DvMF_2451 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (RefSeq), at 3,088,361 to 3,089,614 _2451 Position (kb) 3084 3085 3086 3087 3088 3089Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3083.998 kb on + strand, within DvMF_2449at 3084.056 kb on + strand, within DvMF_2449at 3084.571 kb on + strand, within DvMF_2449at 3084.770 kb on - strand, within DvMF_2449at 3084.843 kb on + strandat 3084.954 kb on + strandat 3085.083 kb on + strandat 3085.591 kb on + strand, within DvMF_2450at 3085.806 kb on + strand, within DvMF_2450at 3085.929 kb on + strand, within DvMF_2450at 3085.987 kb on - strand, within DvMF_2450at 3086.326 kb on - strand, within DvMF_2450at 3086.358 kb on + strand, within DvMF_2450at 3086.466 kb on - strand, within DvMF_2450at 3086.556 kb on + strand, within DvMF_2450at 3086.682 kb on + strand, within DvMF_2450at 3086.695 kb on - strand, within DvMF_2450at 3086.778 kb on + strand, within DvMF_2450at 3086.791 kb on - strand, within DvMF_2450at 3086.892 kb on + strand, within DvMF_2450at 3086.892 kb on + strand, within DvMF_2450at 3086.900 kb on - strand, within DvMF_2450at 3086.900 kb on - strand, within DvMF_2450at 3086.967 kb on - strand, within DvMF_2450at 3087.037 kb on + strand, within DvMF_2450at 3087.045 kb on - strand, within DvMF_2450at 3087.246 kb on - strand, within DvMF_2450at 3087.500 kb on + strand, within DvMF_2450at 3087.509 kb on - strand, within DvMF_2450at 3088.342 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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3,083,998 + DvMF_2449 0.13 -0.5
3,084,056 + DvMF_2449 0.18 -1.9
3,084,571 + DvMF_2449 0.69 -2.5
3,084,770 - DvMF_2449 0.89 -0.7
3,084,843 + +0.7
3,084,954 + -0.2
3,085,083 + -1.0
3,085,591 + DvMF_2450 0.19 +1.8
3,085,806 + DvMF_2450 0.25 -0.8
3,085,929 + DvMF_2450 0.29 -2.9
3,085,987 - DvMF_2450 0.31 -1.1
3,086,326 - DvMF_2450 0.41 -0.8
3,086,358 + DvMF_2450 0.42 -0.5
3,086,466 - DvMF_2450 0.45 -0.1
3,086,556 + DvMF_2450 0.48 -0.3
3,086,682 + DvMF_2450 0.52 -0.5
3,086,695 - DvMF_2450 0.52 +0.3
3,086,778 + DvMF_2450 0.55 -1.2
3,086,791 - DvMF_2450 0.55 -0.5
3,086,892 + DvMF_2450 0.58 -0.2
3,086,892 + DvMF_2450 0.58 -0.2
3,086,900 - DvMF_2450 0.58 -0.8
3,086,900 - DvMF_2450 0.58 -1.8
3,086,967 - DvMF_2450 0.60 -0.6
3,087,037 + DvMF_2450 0.62 -0.7
3,087,045 - DvMF_2450 0.63 +1.8
3,087,246 - DvMF_2450 0.69 -0.8
3,087,500 + DvMF_2450 0.76 -0.6
3,087,509 - DvMF_2450 0.77 -0.2
3,088,342 - +0.4

Or see this region's nucleotide sequence