Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2415 and DvMF_2416 are separated by 2 nucleotides DvMF_2416 and DvMF_2417 are separated by 2 nucleotides DvMF_2417 and DvMF_2418 overlap by 4 nucleotides DvMF_2418 and DvMF_2419 overlap by 4 nucleotides
DvMF_2415: DvMF_2415 - type III secretion protein, HrcV family (RefSeq), at 3,053,406 to 3,055,496
_2415
DvMF_2416: DvMF_2416 - Tetratricopeptide TPR_4 (RefSeq), at 3,055,499 to 3,055,858
_2416
DvMF_2417: DvMF_2417 - hypothetical protein (RefSeq), at 3,055,861 to 3,056,229
_2417
DvMF_2418: DvMF_2418 - type III secretion chaperone SycN (RefSeq), at 3,056,226 to 3,056,627
_2418
DvMF_2419: DvMF_2419 - type III secretion regulator YopN/LcrE/InvE/MxiC (RefSeq), at 3,056,624 to 3,057,763
_2419
Position (kb)
3055
3056 Strain fitness (log2 ratio)
-1
0
1 at 3054.499 kb on + strand, within DvMF_2415 at 3054.657 kb on - strand, within DvMF_2415 at 3054.796 kb on + strand, within DvMF_2415 at 3054.836 kb on + strand, within DvMF_2415 at 3054.925 kb on - strand, within DvMF_2415 at 3054.970 kb on - strand, within DvMF_2415 at 3055.034 kb on - strand, within DvMF_2415 at 3055.226 kb on + strand, within DvMF_2415 at 3055.257 kb on + strand, within DvMF_2415 at 3055.465 kb on - strand at 3055.505 kb on - strand at 3055.595 kb on + strand, within DvMF_2416 at 3055.624 kb on - strand, within DvMF_2416 at 3055.624 kb on - strand, within DvMF_2416 at 3055.858 kb on + strand at 3055.886 kb on - strand at 3055.964 kb on + strand, within DvMF_2417 at 3056.000 kb on + strand, within DvMF_2417 at 3056.095 kb on - strand, within DvMF_2417 at 3056.371 kb on + strand, within DvMF_2418 at 3056.379 kb on - strand, within DvMF_2418 at 3056.508 kb on + strand, within DvMF_2418 at 3056.573 kb on + strand, within DvMF_2418 at 3056.577 kb on + strand, within DvMF_2418 at 3056.592 kb on - strand at 3056.686 kb on - strand at 3056.808 kb on + strand, within DvMF_2419 at 3056.808 kb on + strand, within DvMF_2419 at 3056.816 kb on - strand, within DvMF_2419 at 3056.816 kb on - strand, within DvMF_2419 at 3056.816 kb on - strand, within DvMF_2419 at 3056.816 kb on - strand, within DvMF_2419
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 3,054,499 + DvMF_2415 0.52 -0.4 3,054,657 - DvMF_2415 0.60 -0.6 3,054,796 + DvMF_2415 0.66 -0.6 3,054,836 + DvMF_2415 0.68 -0.8 3,054,925 - DvMF_2415 0.73 -0.9 3,054,970 - DvMF_2415 0.75 -0.8 3,055,034 - DvMF_2415 0.78 -0.6 3,055,226 + DvMF_2415 0.87 -0.6 3,055,257 + DvMF_2415 0.89 -1.1 3,055,465 - -1.4 3,055,505 - +0.3 3,055,595 + DvMF_2416 0.27 -1.4 3,055,624 - DvMF_2416 0.35 -1.2 3,055,624 - DvMF_2416 0.35 -0.5 3,055,858 + -0.6 3,055,886 - -0.4 3,055,964 + DvMF_2417 0.28 -0.6 3,056,000 + DvMF_2417 0.38 -0.3 3,056,095 - DvMF_2417 0.63 +0.2 3,056,371 + DvMF_2418 0.36 -0.6 3,056,379 - DvMF_2418 0.38 +1.5 3,056,508 + DvMF_2418 0.70 -0.3 3,056,573 + DvMF_2418 0.86 -0.7 3,056,577 + DvMF_2418 0.87 -0.8 3,056,592 - -0.6 3,056,686 - -0.2 3,056,808 + DvMF_2419 0.16 -0.8 3,056,808 + DvMF_2419 0.16 -1.7 3,056,816 - DvMF_2419 0.17 -0.7 3,056,816 - DvMF_2419 0.17 -0.6 3,056,816 - DvMF_2419 0.17 -0.3 3,056,816 - DvMF_2419 0.17 -0.7
Or see this region's nucleotide sequence