Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2383

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2382 and DvMF_2383 are separated by 153 nucleotidesDvMF_2383 and DvMF_2384 are separated by 319 nucleotides DvMF_2382: DvMF_2382 - aspartate-semialdehyde dehydrogenase (RefSeq), at 3,009,528 to 3,010,577 _2382 DvMF_2383: DvMF_2383 - aminotransferase class IV (RefSeq), at 3,010,731 to 3,011,672 _2383 DvMF_2384: DvMF_2384 - glycosyl transferase group 1 (RefSeq), at 3,011,992 to 3,013,116 _2384 Position (kb) 3010 3011 3012Strain fitness (log2 ratio) -2 -1 0 1at 3010.558 kb on - strandat 3010.750 kb on - strandat 3010.773 kb on - strandat 3010.887 kb on - strand, within DvMF_2383at 3011.215 kb on + strand, within DvMF_2383at 3011.417 kb on - strand, within DvMF_2383at 3011.553 kb on - strand, within DvMF_2383at 3011.698 kb on + strandat 3011.725 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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3,010,558 - -2.2
3,010,750 - -0.4
3,010,773 - -2.2
3,010,887 - DvMF_2383 0.17 -2.0
3,011,215 + DvMF_2383 0.51 -1.1
3,011,417 - DvMF_2383 0.73 -0.3
3,011,553 - DvMF_2383 0.87 -1.4
3,011,698 + -1.2
3,011,725 + -0.7

Or see this region's nucleotide sequence