Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2295 and DvMF_2296 are separated by 256 nucleotides DvMF_2296 and DvMF_2297 are separated by 39 nucleotides DvMF_2297 and DvMF_2298 are separated by 386 nucleotides
DvMF_2295: DvMF_2295 - chaperone protein DnaJ (RefSeq), at 2,883,088 to 2,884,212
_2295
DvMF_2296: DvMF_2296 - hypothetical protein (RefSeq), at 2,884,469 to 2,885,122
_2296
DvMF_2297: DvMF_2297 - hypothetical protein (RefSeq), at 2,885,162 to 2,885,677
_2297
DvMF_2298: DvMF_2298 - outer membrane efflux protein (RefSeq), at 2,886,064 to 2,887,641
_2298
Position (kb)
2884
2885
2886 Strain fitness (log2 ratio)
-1
0
1 at 2883.647 kb on + strand, within DvMF_2295 at 2883.855 kb on + strand, within DvMF_2295 at 2884.034 kb on + strand, within DvMF_2295 at 2884.088 kb on + strand, within DvMF_2295 at 2884.554 kb on + strand, within DvMF_2296 at 2884.640 kb on - strand, within DvMF_2296 at 2884.668 kb on - strand, within DvMF_2296 at 2884.702 kb on + strand, within DvMF_2296 at 2884.735 kb on + strand, within DvMF_2296 at 2884.951 kb on - strand, within DvMF_2296 at 2885.067 kb on + strand at 2885.236 kb on - strand, within DvMF_2297 at 2885.340 kb on - strand, within DvMF_2297 at 2885.454 kb on - strand, within DvMF_2297 at 2885.488 kb on - strand, within DvMF_2297 at 2885.786 kb on - strand at 2885.914 kb on + strand at 2886.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 2,883,647 + DvMF_2295 0.50 -0.3 2,883,855 + DvMF_2295 0.68 -1.0 2,884,034 + DvMF_2295 0.84 -0.0 2,884,088 + DvMF_2295 0.89 -0.6 2,884,554 + DvMF_2296 0.13 +0.2 2,884,640 - DvMF_2296 0.26 -0.4 2,884,668 - DvMF_2296 0.30 -0.2 2,884,702 + DvMF_2296 0.36 +0.9 2,884,735 + DvMF_2296 0.41 -0.1 2,884,951 - DvMF_2296 0.74 -0.4 2,885,067 + -0.7 2,885,236 - DvMF_2297 0.14 -0.4 2,885,340 - DvMF_2297 0.34 -1.1 2,885,454 - DvMF_2297 0.57 -0.5 2,885,488 - DvMF_2297 0.63 -0.2 2,885,786 - -0.7 2,885,914 + -0.8 2,886,043 - -0.1
Or see this region's nucleotide sequence