Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2217

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliP and DvMF_2216 are separated by 13 nucleotidesDvMF_2216 and DvMF_2217 are separated by 179 nucleotidesDvMF_2217 and DvMF_2218 are separated by 655 nucleotides DvMF_2215: fliP - flagellar biosynthesis protein FliP (RefSeq), at 2,767,902 to 2,768,783 fliP DvMF_2216: DvMF_2216 - flagellar biosynthetic protein FliQ (RefSeq), at 2,768,797 to 2,769,066 _2216 DvMF_2217: DvMF_2217 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 2,769,246 to 2,770,280 _2217 DvMF_2218: DvMF_2218 - Lytic transglycosylase catalytic (RefSeq), at 2,770,936 to 2,772,792 _2218 Position (kb) 2769 2770 2771Strain fitness (log2 ratio) -1 0 1 2at 2768.299 kb on - strand, within fliPat 2768.315 kb on - strand, within fliPat 2768.466 kb on - strand, within fliPat 2768.575 kb on + strand, within fliPat 2768.892 kb on - strand, within DvMF_2216at 2769.297 kb on - strandat 2769.309 kb on - strandat 2769.353 kb on - strand, within DvMF_2217at 2769.617 kb on - strand, within DvMF_2217at 2770.026 kb on - strand, within DvMF_2217at 2770.026 kb on - strand, within DvMF_2217at 2770.223 kb on + strandat 2770.375 kb on - strandat 2770.797 kb on - strandat 2770.958 kb on + strandat 2770.958 kb on + strandat 2771.081 kb on - strandat 2771.116 kb on - strandat 2771.144 kb on - strand, within DvMF_2218at 2771.178 kb on + strand, within DvMF_2218

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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2,768,299 - fliP DvMF_2215 0.45 +1.4
2,768,315 - fliP DvMF_2215 0.47 +1.3
2,768,466 - fliP DvMF_2215 0.64 +1.6
2,768,575 + fliP DvMF_2215 0.76 +1.1
2,768,892 - DvMF_2216 0.35 +1.1
2,769,297 - -0.8
2,769,309 - -0.5
2,769,353 - DvMF_2217 0.10 -0.7
2,769,617 - DvMF_2217 0.36 -0.8
2,770,026 - DvMF_2217 0.75 -0.7
2,770,026 - DvMF_2217 0.75 -0.1
2,770,223 + -0.8
2,770,375 - -1.3
2,770,797 - -0.6
2,770,958 + -0.4
2,770,958 + +0.0
2,771,081 - +2.4
2,771,116 - -0.6
2,771,144 - DvMF_2218 0.11 +0.4
2,771,178 + DvMF_2218 0.13 -0.1

Or see this region's nucleotide sequence