Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2211 and DvMF_2212 are separated by 81 nucleotides DvMF_2212 and DvMF_2213 are separated by 26 nucleotides DvMF_2213 and DvMF_2214 are separated by 103 nucleotides
DvMF_2211: DvMF_2211 - OmpA/MotB domain protein (RefSeq), at 2,764,982 to 2,765,917
_2211
DvMF_2212: DvMF_2212 - flagellar basal body-associated protein FliL (RefSeq), at 2,765,999 to 2,766,514
_2212
DvMF_2213: DvMF_2213 - flagellar motor switch protein FliN (RefSeq), at 2,766,541 to 2,767,083
_2213
DvMF_2214: DvMF_2214 - flagellar biosynthesis protein FliO (RefSeq), at 2,767,187 to 2,767,762
_2214
Position (kb)
2765
2766
2767 Strain fitness (log2 ratio)
-1
0
1
2 at 2765.108 kb on + strand, within DvMF_2211 at 2765.109 kb on - strand, within DvMF_2211 at 2765.128 kb on + strand, within DvMF_2211 at 2765.131 kb on - strand, within DvMF_2211 at 2765.141 kb on - strand, within DvMF_2211 at 2765.256 kb on - strand, within DvMF_2211 at 2765.499 kb on - strand, within DvMF_2211 at 2765.510 kb on + strand, within DvMF_2211 at 2765.550 kb on - strand, within DvMF_2211 at 2765.679 kb on - strand, within DvMF_2211 at 2765.823 kb on - strand, within DvMF_2211 at 2765.868 kb on + strand at 2765.980 kb on - strand at 2766.054 kb on + strand, within DvMF_2212 at 2766.172 kb on + strand, within DvMF_2212 at 2766.468 kb on + strand at 2766.704 kb on + strand, within DvMF_2213 at 2766.704 kb on + strand, within DvMF_2213 at 2766.712 kb on - strand, within DvMF_2213 at 2766.914 kb on - strand, within DvMF_2213 at 2766.916 kb on + strand, within DvMF_2213 at 2766.996 kb on + strand, within DvMF_2213 at 2767.267 kb on - strand, within DvMF_2214 at 2767.427 kb on - strand, within DvMF_2214
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 2,765,108 + DvMF_2211 0.13 -0.4 2,765,109 - DvMF_2211 0.14 -0.8 2,765,128 + DvMF_2211 0.16 -0.0 2,765,131 - DvMF_2211 0.16 -0.4 2,765,141 - DvMF_2211 0.17 -0.4 2,765,256 - DvMF_2211 0.29 +0.1 2,765,499 - DvMF_2211 0.55 -1.6 2,765,510 + DvMF_2211 0.56 -0.3 2,765,550 - DvMF_2211 0.61 -0.1 2,765,679 - DvMF_2211 0.74 -0.4 2,765,823 - DvMF_2211 0.90 -0.0 2,765,868 + -0.4 2,765,980 - -0.4 2,766,054 + DvMF_2212 0.11 +1.8 2,766,172 + DvMF_2212 0.34 +1.5 2,766,468 + +1.7 2,766,704 + DvMF_2213 0.30 +0.1 2,766,704 + DvMF_2213 0.30 -0.2 2,766,712 - DvMF_2213 0.31 +0.4 2,766,914 - DvMF_2213 0.69 +2.4 2,766,916 + DvMF_2213 0.69 +0.1 2,766,996 + DvMF_2213 0.84 +0.9 2,767,267 - DvMF_2214 0.14 +0.9 2,767,427 - DvMF_2214 0.42 +1.7
Or see this region's nucleotide sequence