Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2203

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2202 and DvMF_2203 are separated by 2 nucleotidesDvMF_2203 and DvMF_2204 are separated by 188 nucleotides DvMF_2202: DvMF_2202 - Glucose-6-phosphate isomerase (RefSeq), at 2,755,561 to 2,756,922 _2202 DvMF_2203: DvMF_2203 - hypothetical protein (RefSeq), at 2,756,925 to 2,757,218 _2203 DvMF_2204: DvMF_2204 - aminotransferase class I and II (RefSeq), at 2,757,407 to 2,758,579 _2204 Position (kb) 2756 2757 2758Strain fitness (log2 ratio) -1 0 1at 2756.924 kb on + strandat 2756.924 kb on + strandat 2757.132 kb on + strand, within DvMF_2203at 2757.152 kb on - strand, within DvMF_2203at 2757.263 kb on - strandat 2757.439 kb on + strandat 2757.530 kb on + strand, within DvMF_2204at 2757.533 kb on - strand, within DvMF_2204at 2757.582 kb on - strand, within DvMF_2204at 2757.582 kb on - strand, within DvMF_2204at 2757.618 kb on - strand, within DvMF_2204at 2757.646 kb on - strand, within DvMF_2204at 2757.830 kb on - strand, within DvMF_2204at 2757.833 kb on + strand, within DvMF_2204at 2757.866 kb on + strand, within DvMF_2204at 2757.866 kb on + strand, within DvMF_2204at 2757.866 kb on + strand, within DvMF_2204at 2757.867 kb on + strand, within DvMF_2204at 2757.875 kb on - strand, within DvMF_2204at 2758.134 kb on + strand, within DvMF_2204

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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2,756,924 + -0.6
2,756,924 + -0.3
2,757,132 + DvMF_2203 0.70 -1.5
2,757,152 - DvMF_2203 0.77 +0.0
2,757,263 - -0.6
2,757,439 + -1.0
2,757,530 + DvMF_2204 0.10 -1.2
2,757,533 - DvMF_2204 0.11 -1.0
2,757,582 - DvMF_2204 0.15 -1.5
2,757,582 - DvMF_2204 0.15 -0.7
2,757,618 - DvMF_2204 0.18 -0.1
2,757,646 - DvMF_2204 0.20 -0.5
2,757,830 - DvMF_2204 0.36 -0.6
2,757,833 + DvMF_2204 0.36 +0.9
2,757,866 + DvMF_2204 0.39 -0.2
2,757,866 + DvMF_2204 0.39 +1.4
2,757,866 + DvMF_2204 0.39 -1.3
2,757,867 + DvMF_2204 0.39 -1.1
2,757,875 - DvMF_2204 0.40 -0.7
2,758,134 + DvMF_2204 0.62 -0.0

Or see this region's nucleotide sequence