Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2157 and DvMF_2158 are separated by 136 nucleotides DvMF_2158 and DvMF_2159 are separated by 77 nucleotides
DvMF_2157: DvMF_2157 - secretion protein HlyD family protein (RefSeq), at 2,690,470 to 2,691,543
_2157
DvMF_2158: DvMF_2158 - transcriptional regulator, TetR family (RefSeq), at 2,691,680 to 2,692,414
_2158
DvMF_2159: DvMF_2159 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,692,492 to 2,694,081
_2159
Position (kb)
2691
2692
2693 Strain fitness (log2 ratio)
-2
-1
0
1 at 2691.043 kb on + strand, within DvMF_2157 at 2691.046 kb on - strand, within DvMF_2157 at 2691.051 kb on - strand, within DvMF_2157 at 2691.859 kb on + strand, within DvMF_2158 at 2691.867 kb on - strand, within DvMF_2158 at 2691.867 kb on - strand, within DvMF_2158 at 2691.873 kb on - strand, within DvMF_2158 at 2692.290 kb on + strand, within DvMF_2158 at 2692.333 kb on + strand, within DvMF_2158 at 2692.540 kb on - strand at 2692.550 kb on - strand at 2692.564 kb on + strand at 2692.620 kb on - strand at 2692.620 kb on - strand at 2692.886 kb on + strand, within DvMF_2159 at 2692.910 kb on + strand, within DvMF_2159 at 2692.968 kb on + strand, within DvMF_2159 at 2692.968 kb on + strand, within DvMF_2159 at 2693.186 kb on + strand, within DvMF_2159 at 2693.194 kb on - strand, within DvMF_2159 at 2693.383 kb on + strand, within DvMF_2159
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 2,691,043 + DvMF_2157 0.53 -1.8 2,691,046 - DvMF_2157 0.54 -2.7 2,691,051 - DvMF_2157 0.54 -1.9 2,691,859 + DvMF_2158 0.24 +1.1 2,691,867 - DvMF_2158 0.25 +0.8 2,691,867 - DvMF_2158 0.25 +0.8 2,691,873 - DvMF_2158 0.26 +0.5 2,692,290 + DvMF_2158 0.83 +1.0 2,692,333 + DvMF_2158 0.89 -0.5 2,692,540 - -2.0 2,692,550 - -1.8 2,692,564 + -0.9 2,692,620 - -0.7 2,692,620 - -0.3 2,692,886 + DvMF_2159 0.25 -0.4 2,692,910 + DvMF_2159 0.26 -0.0 2,692,968 + DvMF_2159 0.30 -0.3 2,692,968 + DvMF_2159 0.30 -0.6 2,693,186 + DvMF_2159 0.44 -0.2 2,693,194 - DvMF_2159 0.44 -0.6 2,693,383 + DvMF_2159 0.56 -0.3
Or see this region's nucleotide sequence