Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2148 and DvMF_2149 overlap by 4 nucleotides DvMF_2149 and DvMF_2150 are separated by 175 nucleotides
DvMF_2148: DvMF_2148 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,675,567 to 2,677,756
_2148
DvMF_2149: DvMF_2149 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,677,753 to 2,679,186
_2149
DvMF_2150: DvMF_2150 - glycosyl transferase family 2 (RefSeq), at 2,679,362 to 2,680,270
_2150
Position (kb)
2677
2678
2679
2680 Strain fitness (log2 ratio)
-2
-1
0
1 at 2676.754 kb on - strand, within DvMF_2148 at 2676.840 kb on + strand, within DvMF_2148 at 2676.957 kb on - strand, within DvMF_2148 at 2677.334 kb on - strand, within DvMF_2148 at 2677.467 kb on + strand, within DvMF_2148 at 2677.594 kb on - strand at 2677.669 kb on + strand at 2677.712 kb on + strand at 2677.712 kb on + strand at 2677.804 kb on + strand at 2677.832 kb on - strand at 2678.023 kb on + strand, within DvMF_2149 at 2678.088 kb on - strand, within DvMF_2149 at 2678.101 kb on - strand, within DvMF_2149 at 2678.218 kb on + strand, within DvMF_2149 at 2678.554 kb on - strand, within DvMF_2149 at 2678.821 kb on - strand, within DvMF_2149 at 2679.020 kb on + strand, within DvMF_2149 at 2679.463 kb on - strand, within DvMF_2150 at 2679.495 kb on + strand, within DvMF_2150 at 2679.503 kb on - strand, within DvMF_2150 at 2679.847 kb on + strand, within DvMF_2150 at 2679.984 kb on + strand, within DvMF_2150
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 2,676,754 - DvMF_2148 0.54 -2.2 2,676,840 + DvMF_2148 0.58 -1.6 2,676,957 - DvMF_2148 0.63 +1.3 2,677,334 - DvMF_2148 0.81 -1.2 2,677,467 + DvMF_2148 0.87 -1.1 2,677,594 - +0.0 2,677,669 + -0.2 2,677,712 + -0.8 2,677,712 + -1.3 2,677,804 + +1.1 2,677,832 - -0.8 2,678,023 + DvMF_2149 0.19 -0.1 2,678,088 - DvMF_2149 0.23 -0.1 2,678,101 - DvMF_2149 0.24 -0.3 2,678,218 + DvMF_2149 0.32 -0.4 2,678,554 - DvMF_2149 0.56 -0.8 2,678,821 - DvMF_2149 0.74 -1.3 2,679,020 + DvMF_2149 0.88 -0.3 2,679,463 - DvMF_2150 0.11 -0.4 2,679,495 + DvMF_2150 0.15 -0.1 2,679,503 - DvMF_2150 0.16 -0.2 2,679,847 + DvMF_2150 0.53 -0.5 2,679,984 + DvMF_2150 0.68 +1.7
Or see this region's nucleotide sequence