Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2067

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2066 and DvMF_2067 are separated by 543 nucleotidesDvMF_2067 and DvMF_2068 are separated by 440 nucleotides DvMF_2066: DvMF_2066 - heavy metal translocating P-type ATPase (RefSeq), at 2,561,057 to 2,563,573 _2066 DvMF_2067: DvMF_2067 - hypothetical protein (RefSeq), at 2,564,117 to 2,565,424 _2067 DvMF_2068: DvMF_2068 - peptidase M48 Ste24p (RefSeq), at 2,565,865 to 2,566,827 _2068 Position (kb) 2564 2565 2566Strain fitness (log2 ratio) -2 -1 0 1at 2563.224 kb on - strand, within DvMF_2066at 2563.261 kb on - strand, within DvMF_2066at 2563.342 kb on + strandat 2563.434 kb on - strandat 2563.436 kb on + strandat 2563.814 kb on + strandat 2564.109 kb on - strandat 2564.176 kb on - strandat 2564.296 kb on + strand, within DvMF_2067at 2564.303 kb on + strand, within DvMF_2067at 2564.311 kb on - strand, within DvMF_2067at 2564.312 kb on - strand, within DvMF_2067at 2564.414 kb on + strand, within DvMF_2067at 2564.724 kb on + strand, within DvMF_2067at 2564.995 kb on - strand, within DvMF_2067at 2565.118 kb on - strand, within DvMF_2067at 2565.248 kb on + strand, within DvMF_2067at 2565.690 kb on - strandat 2565.700 kb on + strandat 2566.009 kb on + strand, within DvMF_2068at 2566.374 kb on - strand, within DvMF_2068

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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2,563,224 - DvMF_2066 0.86 -0.6
2,563,261 - DvMF_2066 0.88 -0.7
2,563,342 + -0.6
2,563,434 - -1.1
2,563,436 + -0.5
2,563,814 + -1.8
2,564,109 - -0.5
2,564,176 - +0.3
2,564,296 + DvMF_2067 0.14 +0.9
2,564,303 + DvMF_2067 0.14 +1.1
2,564,311 - DvMF_2067 0.15 +0.6
2,564,312 - DvMF_2067 0.15 +1.0
2,564,414 + DvMF_2067 0.23 +1.0
2,564,724 + DvMF_2067 0.46 +1.5
2,564,995 - DvMF_2067 0.67 +0.9
2,565,118 - DvMF_2067 0.77 +1.2
2,565,248 + DvMF_2067 0.86 +0.8
2,565,690 - -0.7
2,565,700 + -0.7
2,566,009 + DvMF_2068 0.15 -1.0
2,566,374 - DvMF_2068 0.53 +1.7

Or see this region's nucleotide sequence