Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2040

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaspS and DvMF_2039 are separated by 151 nucleotidesDvMF_2039 and DvMF_2040 are separated by 1 nucleotidesDvMF_2040 and DvMF_2041 are separated by 205 nucleotides DvMF_2038: aspS - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data), at 2,528,054 to 2,529,898 aspS DvMF_2039: DvMF_2039 - peptide deformylase (RefSeq), at 2,530,050 to 2,530,604 _2039 DvMF_2040: DvMF_2040 - methionyl-tRNA formyltransferase (RefSeq), at 2,530,606 to 2,531,715 _2040 DvMF_2041: DvMF_2041 - protein of unknown function DUF116 (RefSeq), at 2,531,921 to 2,532,985 _2041 Position (kb) 2530 2531 2532Strain fitness (log2 ratio) -3 -2 -1 0 1at 2529.892 kb on + strandat 2529.892 kb on + strandat 2529.899 kb on + strandat 2531.734 kb on + strandat 2531.741 kb on + strandat 2531.756 kb on - strandat 2531.783 kb on - strandat 2531.923 kb on + strandat 2531.931 kb on - strandat 2531.931 kb on - strandat 2532.068 kb on + strand, within DvMF_2041at 2532.156 kb on + strand, within DvMF_2041at 2532.184 kb on + strand, within DvMF_2041at 2532.347 kb on - strand, within DvMF_2041at 2532.494 kb on - strand, within DvMF_2041at 2532.657 kb on + strand, within DvMF_2041

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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2,529,892 + -0.5
2,529,892 + -0.0
2,529,899 + -0.4
2,531,734 + -0.4
2,531,741 + -0.6
2,531,756 - -0.9
2,531,783 - -0.7
2,531,923 + -0.2
2,531,931 - -2.8
2,531,931 - -0.3
2,532,068 + DvMF_2041 0.14 -1.9
2,532,156 + DvMF_2041 0.22 -0.8
2,532,184 + DvMF_2041 0.25 -2.3
2,532,347 - DvMF_2041 0.40 -2.0
2,532,494 - DvMF_2041 0.54 -1.1
2,532,657 + DvMF_2041 0.69 -1.0

Or see this region's nucleotide sequence