Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1928 and DvMF_1929 are separated by 37 nucleotides DvMF_1929 and DvMF_1930 are separated by 120 nucleotides DvMF_1930 and DvMF_1931 are separated by 11 nucleotides
DvMF_1928: DvMF_1928 - FAD dependent oxidoreductase (RefSeq), at 2,378,075 to 2,379,457
_1928
DvMF_1929: DvMF_1929 - peptidase M24 (RefSeq), at 2,379,495 to 2,380,565
_1929
DvMF_1930: DvMF_1930 - protein of unknown function DUF336 (RefSeq), at 2,380,686 to 2,381,120
_1930
DvMF_1931: DvMF_1931 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,381,132 to 2,383,054
_1931
Position (kb)
2379
2380
2381 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2378.537 kb on + strand, within DvMF_1928 at 2378.620 kb on - strand, within DvMF_1928 at 2379.300 kb on + strand, within DvMF_1928 at 2379.335 kb on - strand at 2379.352 kb on - strand at 2379.422 kb on - strand at 2379.680 kb on + strand, within DvMF_1929 at 2379.688 kb on - strand, within DvMF_1929 at 2379.701 kb on + strand, within DvMF_1929 at 2379.778 kb on - strand, within DvMF_1929 at 2379.859 kb on - strand, within DvMF_1929 at 2379.859 kb on - strand, within DvMF_1929 at 2379.908 kb on + strand, within DvMF_1929 at 2380.075 kb on - strand, within DvMF_1929 at 2380.156 kb on - strand, within DvMF_1929 at 2380.187 kb on + strand, within DvMF_1929 at 2380.210 kb on + strand, within DvMF_1929 at 2380.210 kb on + strand, within DvMF_1929 at 2380.252 kb on + strand, within DvMF_1929 at 2380.260 kb on - strand, within DvMF_1929 at 2380.490 kb on + strand at 2380.661 kb on + strand at 2380.871 kb on + strand, within DvMF_1930 at 2380.906 kb on - strand, within DvMF_1930 at 2381.069 kb on - strand, within DvMF_1930 at 2381.130 kb on + strand at 2381.162 kb on - strand at 2381.190 kb on - strand at 2381.266 kb on + strand at 2381.266 kb on + strand at 2381.539 kb on + strand, within DvMF_1931
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 2,378,537 + DvMF_1928 0.33 +1.0 2,378,620 - DvMF_1928 0.39 +0.2 2,379,300 + DvMF_1928 0.89 +0.5 2,379,335 - -0.0 2,379,352 - +0.4 2,379,422 - +0.0 2,379,680 + DvMF_1929 0.17 -2.8 2,379,688 - DvMF_1929 0.18 -1.2 2,379,701 + DvMF_1929 0.19 -0.2 2,379,778 - DvMF_1929 0.26 -0.4 2,379,859 - DvMF_1929 0.34 -0.8 2,379,859 - DvMF_1929 0.34 +1.5 2,379,908 + DvMF_1929 0.39 -1.8 2,380,075 - DvMF_1929 0.54 -1.2 2,380,156 - DvMF_1929 0.62 -1.5 2,380,187 + DvMF_1929 0.65 -0.7 2,380,210 + DvMF_1929 0.67 -0.7 2,380,210 + DvMF_1929 0.67 -0.6 2,380,252 + DvMF_1929 0.71 -0.7 2,380,260 - DvMF_1929 0.71 -1.9 2,380,490 + -1.0 2,380,661 + -0.8 2,380,871 + DvMF_1930 0.43 -1.2 2,380,906 - DvMF_1930 0.51 -0.9 2,381,069 - DvMF_1930 0.88 -0.9 2,381,130 + -0.8 2,381,162 - +0.0 2,381,190 - +0.2 2,381,266 + -0.5 2,381,266 + -0.5 2,381,539 + DvMF_1931 0.21 -0.4
Or see this region's nucleotide sequence