Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1860

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1859 and DvMF_1860 are separated by 670 nucleotidesDvMF_1860 and DvMF_1861 are separated by 122 nucleotides DvMF_1859: DvMF_1859 - putative two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,275,666 to 2,277,165 _1859 DvMF_1860: DvMF_1860 - pyruvate flavodoxin/ferredoxin oxidoreductase domain protein (RefSeq), at 2,277,836 to 2,281,483 _1860 DvMF_1861: DvMF_1861 - L-lactate permease (RefSeq), at 2,281,606 to 2,283,315 _1861 Position (kb) 2277 2278 2279 2280 2281 2282Strain fitness (log2 ratio) -1 0 1at 2276.940 kb on + strand, within DvMF_1859at 2276.941 kb on - strand, within DvMF_1859at 2277.128 kb on + strandat 2277.128 kb on + strandat 2277.134 kb on - strandat 2277.136 kb on - strandat 2277.650 kb on - strandat 2281.707 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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2,276,940 + DvMF_1859 0.85 +0.5
2,276,941 - DvMF_1859 0.85 +1.7
2,277,128 + +1.1
2,277,128 + +1.2
2,277,134 - +0.1
2,277,136 - +0.6
2,277,650 - +0.2
2,281,707 + +0.9

Or see this region's nucleotide sequence