Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1819

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1818 and DvMF_1819 are separated by 34 nucleotidesDvMF_1819 and DvMF_1820 are separated by 482 nucleotides DvMF_1818: DvMF_1818 - Radical SAM domain protein (RefSeq), at 2,218,752 to 2,219,468 _1818 DvMF_1819: DvMF_1819 - anaerobic ribonucleoside triphosphate reductase (RefSeq), at 2,219,503 to 2,221,413 _1819 DvMF_1820: DvMF_1820 - hypothetical protein (RefSeq), at 2,221,896 to 2,223,434 _1820 Position (kb) 2219 2220 2221 2222Strain fitness (log2 ratio) -1 0 1 2at 2218.537 kb on - strandat 2218.970 kb on + strand, within DvMF_1818at 2218.978 kb on - strand, within DvMF_1818at 2219.233 kb on - strand, within DvMF_1818at 2219.349 kb on - strand, within DvMF_1818at 2219.408 kb on - strandat 2219.501 kb on + strandat 2219.501 kb on + strandat 2219.509 kb on - strandat 2219.509 kb on - strandat 2219.750 kb on + strand, within DvMF_1819at 2219.789 kb on - strand, within DvMF_1819at 2219.887 kb on + strand, within DvMF_1819at 2219.887 kb on + strand, within DvMF_1819at 2219.887 kb on + strand, within DvMF_1819at 2220.053 kb on + strand, within DvMF_1819at 2220.364 kb on - strand, within DvMF_1819at 2220.480 kb on + strand, within DvMF_1819at 2220.587 kb on + strand, within DvMF_1819at 2220.587 kb on + strand, within DvMF_1819at 2220.595 kb on - strand, within DvMF_1819at 2220.606 kb on + strand, within DvMF_1819at 2220.611 kb on + strand, within DvMF_1819at 2220.669 kb on - strand, within DvMF_1819at 2220.931 kb on + strand, within DvMF_1819at 2220.939 kb on - strand, within DvMF_1819at 2220.969 kb on + strand, within DvMF_1819at 2220.977 kb on - strand, within DvMF_1819at 2221.034 kb on - strand, within DvMF_1819at 2221.263 kb on - strandat 2221.635 kb on + strandat 2222.010 kb on - strandat 2222.208 kb on - strand, within DvMF_1820

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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2,218,537 - -0.6
2,218,970 + DvMF_1818 0.30 -0.5
2,218,978 - DvMF_1818 0.32 +2.4
2,219,233 - DvMF_1818 0.67 -0.5
2,219,349 - DvMF_1818 0.83 +0.3
2,219,408 - -0.5
2,219,501 + -0.7
2,219,501 + -0.5
2,219,509 - +0.2
2,219,509 - -0.3
2,219,750 + DvMF_1819 0.13 -1.3
2,219,789 - DvMF_1819 0.15 -0.1
2,219,887 + DvMF_1819 0.20 -0.9
2,219,887 + DvMF_1819 0.20 +0.2
2,219,887 + DvMF_1819 0.20 -0.5
2,220,053 + DvMF_1819 0.29 +0.5
2,220,364 - DvMF_1819 0.45 -1.4
2,220,480 + DvMF_1819 0.51 -0.8
2,220,587 + DvMF_1819 0.57 -0.4
2,220,587 + DvMF_1819 0.57 -0.4
2,220,595 - DvMF_1819 0.57 -1.3
2,220,606 + DvMF_1819 0.58 -0.6
2,220,611 + DvMF_1819 0.58 -0.5
2,220,669 - DvMF_1819 0.61 -0.6
2,220,931 + DvMF_1819 0.75 -0.2
2,220,939 - DvMF_1819 0.75 -1.2
2,220,969 + DvMF_1819 0.77 -0.9
2,220,977 - DvMF_1819 0.77 -0.4
2,221,034 - DvMF_1819 0.80 +0.0
2,221,263 - -0.4
2,221,635 + -0.6
2,222,010 - -0.4
2,222,208 - DvMF_1820 0.20 -0.2

Or see this region's nucleotide sequence