Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1780 and DvMF_1781 are separated by 613 nucleotides DvMF_1781 and DvMF_1782 are separated by 204 nucleotides
DvMF_1780: DvMF_1780 - Aldehyde Dehydrogenase (RefSeq), at 2,178,903 to 2,180,585
_1780
DvMF_1781: DvMF_1781 - glycosyl transferase family 8 (RefSeq), at 2,181,199 to 2,182,047
_1781
DvMF_1782: DvMF_1782 - CheD (RefSeq), at 2,182,252 to 2,182,956
_1782
Position (kb)
2181
2182
2183 Strain fitness (log2 ratio)
-1
0
1 at 2180.263 kb on + strand, within DvMF_1780 at 2180.342 kb on + strand, within DvMF_1780 at 2180.342 kb on + strand, within DvMF_1780 at 2180.342 kb on + strand, within DvMF_1780 at 2180.375 kb on - strand, within DvMF_1780 at 2180.411 kb on + strand, within DvMF_1780 at 2180.506 kb on - strand at 2180.758 kb on + strand at 2180.780 kb on + strand at 2180.803 kb on - strand at 2181.252 kb on + strand at 2181.273 kb on + strand at 2181.472 kb on + strand, within DvMF_1781 at 2181.544 kb on - strand, within DvMF_1781 at 2181.671 kb on + strand, within DvMF_1781 at 2181.679 kb on - strand, within DvMF_1781 at 2181.679 kb on - strand, within DvMF_1781 at 2181.714 kb on - strand, within DvMF_1781 at 2181.793 kb on + strand, within DvMF_1781 at 2181.861 kb on + strand, within DvMF_1781 at 2182.093 kb on - strand at 2182.120 kb on + strand at 2182.238 kb on - strand at 2182.292 kb on - strand at 2182.480 kb on - strand, within DvMF_1782 at 2182.605 kb on + strand, within DvMF_1782 at 2182.863 kb on + strand, within DvMF_1782 at 2182.863 kb on - strand, within DvMF_1782 at 2182.920 kb on - strand at 2182.970 kb on + strand at 2182.971 kb on + strand at 2182.985 kb on - strand at 2183.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 2,180,263 + DvMF_1780 0.81 +0.5 2,180,342 + DvMF_1780 0.86 -0.9 2,180,342 + DvMF_1780 0.86 +0.1 2,180,342 + DvMF_1780 0.86 +0.7 2,180,375 - DvMF_1780 0.87 -0.7 2,180,411 + DvMF_1780 0.90 +0.0 2,180,506 - -0.7 2,180,758 + -0.6 2,180,780 + -1.4 2,180,803 - -0.7 2,181,252 + +0.0 2,181,273 + -0.3 2,181,472 + DvMF_1781 0.32 +1.1 2,181,544 - DvMF_1781 0.41 +0.3 2,181,671 + DvMF_1781 0.56 +1.1 2,181,679 - DvMF_1781 0.57 +0.0 2,181,679 - DvMF_1781 0.57 +0.3 2,181,714 - DvMF_1781 0.61 +0.1 2,181,793 + DvMF_1781 0.70 +0.0 2,181,861 + DvMF_1781 0.78 +0.4 2,182,093 - -1.2 2,182,120 + -1.0 2,182,238 - -1.1 2,182,292 - +1.6 2,182,480 - DvMF_1782 0.32 -1.5 2,182,605 + DvMF_1782 0.50 -0.8 2,182,863 + DvMF_1782 0.87 -0.0 2,182,863 - DvMF_1782 0.87 -1.3 2,182,920 - +0.1 2,182,970 + +0.3 2,182,971 + -1.5 2,182,985 - -0.8 2,183,035 - -0.3
Or see this region's nucleotide sequence