Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1781

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1780 and DvMF_1781 are separated by 613 nucleotidesDvMF_1781 and DvMF_1782 are separated by 204 nucleotides DvMF_1780: DvMF_1780 - Aldehyde Dehydrogenase (RefSeq), at 2,178,903 to 2,180,585 _1780 DvMF_1781: DvMF_1781 - glycosyl transferase family 8 (RefSeq), at 2,181,199 to 2,182,047 _1781 DvMF_1782: DvMF_1782 - CheD (RefSeq), at 2,182,252 to 2,182,956 _1782 Position (kb) 2181 2182 2183Strain fitness (log2 ratio) -1 0 1at 2180.263 kb on + strand, within DvMF_1780at 2180.342 kb on + strand, within DvMF_1780at 2180.342 kb on + strand, within DvMF_1780at 2180.342 kb on + strand, within DvMF_1780at 2180.375 kb on - strand, within DvMF_1780at 2180.411 kb on + strand, within DvMF_1780at 2180.506 kb on - strandat 2180.758 kb on + strandat 2180.780 kb on + strandat 2180.803 kb on - strandat 2181.252 kb on + strandat 2181.273 kb on + strandat 2181.472 kb on + strand, within DvMF_1781at 2181.544 kb on - strand, within DvMF_1781at 2181.671 kb on + strand, within DvMF_1781at 2181.679 kb on - strand, within DvMF_1781at 2181.679 kb on - strand, within DvMF_1781at 2181.714 kb on - strand, within DvMF_1781at 2181.793 kb on + strand, within DvMF_1781at 2181.861 kb on + strand, within DvMF_1781at 2182.093 kb on - strandat 2182.120 kb on + strandat 2182.238 kb on - strandat 2182.292 kb on - strandat 2182.480 kb on - strand, within DvMF_1782at 2182.605 kb on + strand, within DvMF_1782at 2182.863 kb on + strand, within DvMF_1782at 2182.863 kb on - strand, within DvMF_1782at 2182.920 kb on - strandat 2182.970 kb on + strandat 2182.971 kb on + strandat 2182.985 kb on - strandat 2183.035 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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2,180,263 + DvMF_1780 0.81 +0.5
2,180,342 + DvMF_1780 0.86 -0.9
2,180,342 + DvMF_1780 0.86 +0.1
2,180,342 + DvMF_1780 0.86 +0.7
2,180,375 - DvMF_1780 0.87 -0.7
2,180,411 + DvMF_1780 0.90 +0.0
2,180,506 - -0.7
2,180,758 + -0.6
2,180,780 + -1.4
2,180,803 - -0.7
2,181,252 + +0.0
2,181,273 + -0.3
2,181,472 + DvMF_1781 0.32 +1.1
2,181,544 - DvMF_1781 0.41 +0.3
2,181,671 + DvMF_1781 0.56 +1.1
2,181,679 - DvMF_1781 0.57 +0.0
2,181,679 - DvMF_1781 0.57 +0.3
2,181,714 - DvMF_1781 0.61 +0.1
2,181,793 + DvMF_1781 0.70 +0.0
2,181,861 + DvMF_1781 0.78 +0.4
2,182,093 - -1.2
2,182,120 + -1.0
2,182,238 - -1.1
2,182,292 - +1.6
2,182,480 - DvMF_1782 0.32 -1.5
2,182,605 + DvMF_1782 0.50 -0.8
2,182,863 + DvMF_1782 0.87 -0.0
2,182,863 - DvMF_1782 0.87 -1.3
2,182,920 - +0.1
2,182,970 + +0.3
2,182,971 + -1.5
2,182,985 - -0.8
2,183,035 - -0.3

Or see this region's nucleotide sequence