Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1610 and DvMF_1611 are separated by 4 nucleotides DvMF_1611 and DvMF_1612 overlap by 11 nucleotides DvMF_1612 and DvMF_1613 are separated by 616 nucleotides
DvMF_1610: DvMF_1610 - anaerobic dimethyl sulfoxide reductase subunit C (RefSeq), at 1,982,935 to 1,983,810
_1610
DvMF_1611: DvMF_1611 - dimethylsulfoxide reductase, chain B (RefSeq), at 1,983,815 to 1,984,432
_1611
DvMF_1612: DvMF_1612 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family (RefSeq), at 1,984,422 to 1,986,884
_1612
DvMF_1613: DvMF_1613 - formylmethanofuran dehydrogenase subunit E region (RefSeq), at 1,987,501 to 1,989,144
_1613
Position (kb)
1984
1985
1986
1987 Strain fitness (log2 ratio)
-1
0
1 at 1983.470 kb on + strand, within DvMF_1610 at 1983.588 kb on - strand, within DvMF_1610 at 1983.933 kb on + strand, within DvMF_1611 at 1983.975 kb on + strand, within DvMF_1611 at 1984.078 kb on - strand, within DvMF_1611 at 1984.103 kb on - strand, within DvMF_1611 at 1984.336 kb on - strand, within DvMF_1611 at 1984.349 kb on + strand, within DvMF_1611 at 1984.389 kb on + strand at 1984.417 kb on - strand at 1984.492 kb on + strand at 1984.500 kb on - strand at 1984.572 kb on + strand at 1984.734 kb on - strand, within DvMF_1612 at 1984.775 kb on - strand, within DvMF_1612 at 1984.784 kb on + strand, within DvMF_1612 at 1984.784 kb on + strand, within DvMF_1612 at 1984.836 kb on + strand, within DvMF_1612 at 1984.963 kb on + strand, within DvMF_1612 at 1985.004 kb on - strand, within DvMF_1612 at 1985.060 kb on + strand, within DvMF_1612 at 1985.266 kb on + strand, within DvMF_1612 at 1985.382 kb on - strand, within DvMF_1612 at 1985.475 kb on - strand, within DvMF_1612 at 1985.506 kb on + strand, within DvMF_1612 at 1985.533 kb on - strand, within DvMF_1612 at 1985.864 kb on - strand, within DvMF_1612 at 1985.928 kb on + strand, within DvMF_1612 at 1986.091 kb on - strand, within DvMF_1612 at 1986.425 kb on - strand, within DvMF_1612 at 1986.799 kb on + strand at 1986.853 kb on + strand at 1986.861 kb on - strand at 1987.097 kb on - strand at 1987.600 kb on + strand at 1987.652 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 1,983,470 + DvMF_1610 0.61 -0.3 1,983,588 - DvMF_1610 0.75 -0.7 1,983,933 + DvMF_1611 0.19 -0.5 1,983,975 + DvMF_1611 0.26 -0.1 1,984,078 - DvMF_1611 0.43 -0.3 1,984,103 - DvMF_1611 0.47 +0.2 1,984,336 - DvMF_1611 0.84 -0.7 1,984,349 + DvMF_1611 0.86 -0.5 1,984,389 + +0.2 1,984,417 - -0.3 1,984,492 + -0.7 1,984,500 - -0.6 1,984,572 + +0.1 1,984,734 - DvMF_1612 0.13 -0.9 1,984,775 - DvMF_1612 0.14 -0.7 1,984,784 + DvMF_1612 0.15 +0.5 1,984,784 + DvMF_1612 0.15 -1.2 1,984,836 + DvMF_1612 0.17 -0.5 1,984,963 + DvMF_1612 0.22 -0.6 1,985,004 - DvMF_1612 0.24 -0.2 1,985,060 + DvMF_1612 0.26 -0.2 1,985,266 + DvMF_1612 0.34 -0.5 1,985,382 - DvMF_1612 0.39 -1.1 1,985,475 - DvMF_1612 0.43 -1.3 1,985,506 + DvMF_1612 0.44 +0.3 1,985,533 - DvMF_1612 0.45 -0.8 1,985,864 - DvMF_1612 0.59 -0.2 1,985,928 + DvMF_1612 0.61 -0.3 1,986,091 - DvMF_1612 0.68 -0.6 1,986,425 - DvMF_1612 0.81 -0.4 1,986,799 + +0.9 1,986,853 + -1.0 1,986,861 - -0.4 1,987,097 - -1.3 1,987,600 + -0.4 1,987,652 + -1.5
Or see this region's nucleotide sequence