Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1523

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1522 and DvMF_1523 are separated by 16 nucleotidesDvMF_1523 and DvMF_1524 are separated by 215 nucleotidesDvMF_1524 and DvMF_1525 are separated by 122 nucleotides DvMF_1522: DvMF_1522 - NADH-ubiquinone oxidoreductase chain 49kDa (RefSeq), at 1,877,330 to 1,878,406 _1522 DvMF_1523: DvMF_1523 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,878,423 to 1,878,818 _1523 DvMF_1524: DvMF_1524 - flavin reductase domain protein FMN-binding (RefSeq), at 1,879,034 to 1,879,681 _1524 DvMF_1525: DvMF_1525 - Antibiotic biosynthesis monooxygenase (RefSeq), at 1,879,804 to 1,880,109 _1525 Position (kb) 1878 1879Strain fitness (log2 ratio) -2 -1 0 1at 1877.666 kb on - strand, within DvMF_1522at 1877.970 kb on + strand, within DvMF_1522at 1878.079 kb on + strand, within DvMF_1522at 1878.184 kb on - strand, within DvMF_1522at 1878.459 kb on + strandat 1878.484 kb on - strand, within DvMF_1523at 1878.484 kb on - strand, within DvMF_1523at 1878.484 kb on - strand, within DvMF_1523at 1878.589 kb on + strand, within DvMF_1523at 1879.039 kb on - strandat 1879.118 kb on - strand, within DvMF_1524at 1879.367 kb on + strand, within DvMF_1524at 1879.375 kb on - strand, within DvMF_1524at 1879.375 kb on - strand, within DvMF_1524at 1879.432 kb on - strand, within DvMF_1524at 1879.508 kb on - strand, within DvMF_1524at 1879.787 kb on + strandat 1879.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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1,877,666 - DvMF_1522 0.31 -2.1
1,877,970 + DvMF_1522 0.59 -2.1
1,878,079 + DvMF_1522 0.70 -1.3
1,878,184 - DvMF_1522 0.79 -1.0
1,878,459 + -2.0
1,878,484 - DvMF_1523 0.15 -2.7
1,878,484 - DvMF_1523 0.15 -1.4
1,878,484 - DvMF_1523 0.15 -1.5
1,878,589 + DvMF_1523 0.42 -2.1
1,879,039 - -0.3
1,879,118 - DvMF_1524 0.13 -1.1
1,879,367 + DvMF_1524 0.51 -0.8
1,879,375 - DvMF_1524 0.53 -0.0
1,879,375 - DvMF_1524 0.53 -0.0
1,879,432 - DvMF_1524 0.61 +0.7
1,879,508 - DvMF_1524 0.73 -0.3
1,879,787 + -0.9
1,879,795 - +0.9

Or see this region's nucleotide sequence