Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1358

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1357 and DvMF_1358 are separated by 102 nucleotidesDvMF_1358 and DvMF_1359 are separated by 584 nucleotides DvMF_1357: DvMF_1357 - metallophosphoesterase (RefSeq), at 1,660,217 to 1,661,059 _1357 DvMF_1358: DvMF_1358 - molybdenum cofactor synthesis domain protein (RefSeq), at 1,661,162 to 1,662,460 _1358 DvMF_1359: DvMF_1359 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,663,045 to 1,663,962 _1359 Position (kb) 1661 1662 1663Strain fitness (log2 ratio) -3 -2 -1 0 1at 1660.164 kb on - strandat 1660.307 kb on - strand, within DvMF_1357at 1660.413 kb on + strand, within DvMF_1357at 1660.649 kb on + strand, within DvMF_1357at 1660.658 kb on + strand, within DvMF_1357at 1660.745 kb on - strand, within DvMF_1357at 1660.747 kb on + strand, within DvMF_1357at 1661.250 kb on - strandat 1661.501 kb on + strand, within DvMF_1358at 1661.545 kb on - strand, within DvMF_1358at 1661.545 kb on - strand, within DvMF_1358at 1661.545 kb on - strand, within DvMF_1358at 1661.824 kb on + strand, within DvMF_1358at 1662.013 kb on + strand, within DvMF_1358at 1662.263 kb on - strand, within DvMF_1358at 1662.296 kb on - strand, within DvMF_1358at 1662.298 kb on - strand, within DvMF_1358at 1662.314 kb on + strand, within DvMF_1358at 1662.561 kb on - strandat 1662.579 kb on - strandat 1662.579 kb on - strandat 1662.579 kb on - strandat 1662.594 kb on + strandat 1662.741 kb on - strandat 1662.823 kb on - strandat 1662.835 kb on + strandat 1662.870 kb on + strandat 1662.875 kb on + strandat 1662.875 kb on + strandat 1662.878 kb on - strandat 1662.878 kb on - strandat 1662.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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1,660,164 - -0.8
1,660,307 - DvMF_1357 0.11 -0.6
1,660,413 + DvMF_1357 0.23 -0.6
1,660,649 + DvMF_1357 0.51 -0.9
1,660,658 + DvMF_1357 0.52 -0.6
1,660,745 - DvMF_1357 0.63 -0.9
1,660,747 + DvMF_1357 0.63 -0.4
1,661,250 - -1.4
1,661,501 + DvMF_1358 0.26 -0.9
1,661,545 - DvMF_1358 0.29 -2.7
1,661,545 - DvMF_1358 0.29 -1.8
1,661,545 - DvMF_1358 0.29 -2.2
1,661,824 + DvMF_1358 0.51 -2.7
1,662,013 + DvMF_1358 0.66 -3.2
1,662,263 - DvMF_1358 0.85 -0.8
1,662,296 - DvMF_1358 0.87 -0.5
1,662,298 - DvMF_1358 0.87 -1.5
1,662,314 + DvMF_1358 0.89 -1.4
1,662,561 - +0.1
1,662,579 - +0.3
1,662,579 - -1.2
1,662,579 - -3.0
1,662,594 + -0.8
1,662,741 - -0.4
1,662,823 - -0.3
1,662,835 + -0.1
1,662,870 + -0.4
1,662,875 + -1.4
1,662,875 + -1.3
1,662,878 - -0.6
1,662,878 - -0.8
1,662,883 - +0.2

Or see this region's nucleotide sequence