Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1148 and DvMF_1149 are separated by 58 nucleotides DvMF_1149 and DvMF_1150 overlap by 4 nucleotides DvMF_1150 and DvMF_1151 are separated by 196 nucleotides
DvMF_1148: DvMF_1148 - TrkA-N domain protein (RefSeq), at 1,408,259 to 1,410,103
_1148
DvMF_1149: DvMF_1149 - protein of unknown function DUF81 (RefSeq), at 1,410,162 to 1,411,055
_1149
DvMF_1150: DvMF_1150 - alkylhydroperoxidase like protein, AhpD family (RefSeq), at 1,411,052 to 1,411,489
_1150
DvMF_1151: DvMF_1151 - transcriptional regulator, LysR family (RefSeq), at 1,411,686 to 1,412,609
_1151
Position (kb)
1410
1411
1412 Strain fitness (log2 ratio)
-2
-1
0
1 at 1409.230 kb on + strand, within DvMF_1148 at 1409.230 kb on + strand, within DvMF_1148 at 1409.357 kb on + strand, within DvMF_1148 at 1409.801 kb on - strand, within DvMF_1148 at 1409.848 kb on + strand, within DvMF_1148 at 1409.853 kb on + strand, within DvMF_1148 at 1409.858 kb on + strand, within DvMF_1148 at 1409.907 kb on + strand, within DvMF_1148 at 1409.957 kb on - strand at 1410.023 kb on - strand at 1410.048 kb on - strand at 1410.170 kb on + strand at 1410.219 kb on + strand at 1410.424 kb on + strand, within DvMF_1149 at 1410.626 kb on - strand, within DvMF_1149 at 1410.735 kb on + strand, within DvMF_1149 at 1410.745 kb on + strand, within DvMF_1149 at 1410.775 kb on + strand, within DvMF_1149 at 1410.857 kb on - strand, within DvMF_1149 at 1410.970 kb on - strand at 1411.009 kb on - strand at 1411.228 kb on + strand, within DvMF_1150 at 1411.785 kb on + strand, within DvMF_1151 at 1411.915 kb on - strand, within DvMF_1151
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 1,409,230 + DvMF_1148 0.53 -1.3 1,409,230 + DvMF_1148 0.53 -1.8 1,409,357 + DvMF_1148 0.60 -0.8 1,409,801 - DvMF_1148 0.84 -2.2 1,409,848 + DvMF_1148 0.86 -0.6 1,409,853 + DvMF_1148 0.86 -0.6 1,409,858 + DvMF_1148 0.87 -1.9 1,409,907 + DvMF_1148 0.89 -0.6 1,409,957 - -0.7 1,410,023 - -1.1 1,410,048 - -1.3 1,410,170 + -1.3 1,410,219 + -0.4 1,410,424 + DvMF_1149 0.29 -0.2 1,410,626 - DvMF_1149 0.52 +0.1 1,410,735 + DvMF_1149 0.64 -0.4 1,410,745 + DvMF_1149 0.65 -0.5 1,410,775 + DvMF_1149 0.69 -0.1 1,410,857 - DvMF_1149 0.78 -0.4 1,410,970 - -1.3 1,411,009 - -1.2 1,411,228 + DvMF_1150 0.40 -0.2 1,411,785 + DvMF_1151 0.11 -0.5 1,411,915 - DvMF_1151 0.25 -0.9
Or see this region's nucleotide sequence