Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1146

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1144 and DvMF_1145 overlap by 4 nucleotidesDvMF_1145 and DvMF_1146 are separated by 532 nucleotidesDvMF_1146 and DvMF_1147 are separated by 966 nucleotides DvMF_1144: DvMF_1144 - hypothetical protein (RefSeq), at 1,403,824 to 1,404,039 _1144 DvMF_1145: DvMF_1145 - hypothetical protein (RefSeq), at 1,404,036 to 1,404,221 _1145 DvMF_1146: DvMF_1146 - hypothetical protein (RefSeq), at 1,404,754 to 1,405,446 _1146 DvMF_1147: DvMF_1147 - L-lactate permease family protein, putative (RefSeq), at 1,406,413 to 1,407,966 _1147 Position (kb) 1404 1405 1406Strain fitness (log2 ratio) -1 0 1at 1403.783 kb on + strandat 1403.815 kb on - strandat 1403.829 kb on - strandat 1403.835 kb on - strandat 1403.948 kb on + strand, within DvMF_1144at 1403.948 kb on + strand, within DvMF_1144at 1403.976 kb on + strand, within DvMF_1144at 1404.095 kb on + strand, within DvMF_1145at 1404.555 kb on + strandat 1404.563 kb on - strandat 1404.676 kb on + strandat 1404.803 kb on - strandat 1404.854 kb on + strand, within DvMF_1146at 1405.166 kb on + strand, within DvMF_1146at 1405.263 kb on - strand, within DvMF_1146at 1405.374 kb on - strand, within DvMF_1146at 1405.407 kb on + strandat 1405.414 kb on + strandat 1405.414 kb on + strandat 1405.414 kb on + strandat 1405.422 kb on - strandat 1405.422 kb on - strandat 1405.748 kb on + strandat 1405.820 kb on + strandat 1405.875 kb on + strandat 1405.933 kb on + strandat 1405.941 kb on - strandat 1406.094 kb on - strandat 1406.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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1,403,783 + -1.6
1,403,815 - -0.4
1,403,829 - -0.4
1,403,835 - -0.6
1,403,948 + DvMF_1144 0.57 -0.4
1,403,948 + DvMF_1144 0.57 -0.8
1,403,976 + DvMF_1144 0.70 -0.6
1,404,095 + DvMF_1145 0.32 -0.8
1,404,555 + -0.1
1,404,563 - -1.2
1,404,676 + -0.8
1,404,803 - -0.5
1,404,854 + DvMF_1146 0.14 -1.1
1,405,166 + DvMF_1146 0.59 -1.1
1,405,263 - DvMF_1146 0.73 -0.7
1,405,374 - DvMF_1146 0.89 -1.0
1,405,407 + -1.2
1,405,414 + -0.7
1,405,414 + -1.2
1,405,414 + -0.6
1,405,422 - -0.4
1,405,422 - -0.8
1,405,748 + -0.8
1,405,820 + -0.9
1,405,875 + -0.7
1,405,933 + -0.7
1,405,941 - -0.2
1,406,094 - -0.4
1,406,414 + -0.0

Or see this region's nucleotide sequence