Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1014 and DvMF_1015 are separated by 356 nucleotides DvMF_1015 and DvMF_1016 are separated by 2 nucleotides DvMF_1016 and DvMF_1017 are separated by 121 nucleotides DvMF_1017 and DvMF_1018 are separated by 37 nucleotides
DvMF_1014: DvMF_1014 - diguanylate cyclase (RefSeq), at 1,229,596 to 1,231,254
_1014
DvMF_1015: DvMF_1015 - ferrous iron transport protein B (RefSeq), at 1,231,611 to 1,233,890
_1015
DvMF_1016: DvMF_1016 - FeoA family protein (RefSeq), at 1,233,893 to 1,234,150
_1016
DvMF_1017: DvMF_1017 - hypothetical protein (RefSeq), at 1,234,272 to 1,234,478
_1017
DvMF_1018: DvMF_1018 - FeoA family protein (RefSeq), at 1,234,516 to 1,234,764
_1018
Position (kb)
1231
1232
1233
1234 Strain fitness (log2 ratio)
-2
-1
0
1 at 1230.745 kb on - strand, within DvMF_1014 at 1230.774 kb on + strand, within DvMF_1014 at 1231.011 kb on + strand, within DvMF_1014 at 1231.019 kb on - strand, within DvMF_1014 at 1231.019 kb on - strand, within DvMF_1014 at 1231.140 kb on + strand at 1231.140 kb on + strand at 1231.391 kb on - strand at 1231.405 kb on + strand at 1231.615 kb on + strand at 1234.292 kb on - strand at 1234.294 kb on - strand, within DvMF_1017 at 1234.423 kb on + strand, within DvMF_1017 at 1234.490 kb on - strand at 1234.545 kb on - strand, within DvMF_1018 at 1234.639 kb on + strand, within DvMF_1018
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 1,230,745 - DvMF_1014 0.69 -0.7 1,230,774 + DvMF_1014 0.71 -1.6 1,231,011 + DvMF_1014 0.85 -1.8 1,231,019 - DvMF_1014 0.86 -0.8 1,231,019 - DvMF_1014 0.86 -0.7 1,231,140 + -0.6 1,231,140 + -1.2 1,231,391 - +0.6 1,231,405 + -1.0 1,231,615 + -0.0 1,234,292 - -0.0 1,234,294 - DvMF_1017 0.11 +0.5 1,234,423 + DvMF_1017 0.73 -0.1 1,234,490 - -1.0 1,234,545 - DvMF_1018 0.12 +0.0 1,234,639 + DvMF_1018 0.49 +0.5
Or see this region's nucleotide sequence