Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0867 and DvMF_0868 are separated by 530 nucleotides DvMF_0868 and DvMF_0869 are separated by 128 nucleotides DvMF_0869 and DvMF_0870 are separated by 108 nucleotides
DvMF_0867: DvMF_0867 - Redoxin domain protein (RefSeq), at 1,045,332 to 1,045,844
_0867
DvMF_0868: DvMF_0868 - hypothetical protein (RefSeq), at 1,046,375 to 1,046,848
_0868
DvMF_0869: DvMF_0869 - hypothetical protein (RefSeq), at 1,046,977 to 1,047,213
_0869
DvMF_0870: DvMF_0870 - RNA binding S1 domain protein (RefSeq), at 1,047,322 to 1,049,592
_0870
Position (kb)
1046
1047 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1045.501 kb on + strand, within DvMF_0867 at 1045.558 kb on + strand, within DvMF_0867 at 1045.621 kb on - strand, within DvMF_0867 at 1045.810 kb on + strand at 1045.823 kb on - strand at 1046.022 kb on - strand at 1046.046 kb on + strand at 1046.054 kb on - strand at 1046.064 kb on - strand at 1046.064 kb on - strand at 1046.064 kb on - strand at 1046.066 kb on + strand at 1046.074 kb on - strand at 1046.074 kb on - strand at 1046.074 kb on - strand at 1046.076 kb on + strand at 1046.224 kb on + strand at 1046.273 kb on + strand at 1046.281 kb on - strand at 1046.791 kb on + strand, within DvMF_0868 at 1047.024 kb on - strand, within DvMF_0869 at 1047.168 kb on - strand, within DvMF_0869 at 1047.216 kb on - strand at 1047.246 kb on - strand at 1047.423 kb on - strand at 1047.679 kb on + strand, within DvMF_0870 at 1047.712 kb on + strand, within DvMF_0870 at 1047.772 kb on - strand, within DvMF_0870 at 1047.777 kb on + strand, within DvMF_0870 at 1047.815 kb on + strand, within DvMF_0870
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 1,045,501 + DvMF_0867 0.33 -0.7 1,045,558 + DvMF_0867 0.44 +0.0 1,045,621 - DvMF_0867 0.56 -2.2 1,045,810 + -1.0 1,045,823 - -0.9 1,046,022 - -0.0 1,046,046 + -1.4 1,046,054 - -0.9 1,046,064 - -0.6 1,046,064 - +0.7 1,046,064 - -0.8 1,046,066 + -0.2 1,046,074 - +0.3 1,046,074 - +1.0 1,046,074 - -0.2 1,046,076 + -0.8 1,046,224 + -0.2 1,046,273 + -0.4 1,046,281 - +2.2 1,046,791 + DvMF_0868 0.88 -0.9 1,047,024 - DvMF_0869 0.20 -0.3 1,047,168 - DvMF_0869 0.81 -0.5 1,047,216 - -0.8 1,047,246 - -1.4 1,047,423 - -1.1 1,047,679 + DvMF_0870 0.16 -0.2 1,047,712 + DvMF_0870 0.17 -0.6 1,047,772 - DvMF_0870 0.20 -0.4 1,047,777 + DvMF_0870 0.20 -0.5 1,047,815 + DvMF_0870 0.22 -0.4
Or see this region's nucleotide sequence