Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0702

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0701 and DvMF_0702 are separated by 245 nucleotidesDvMF_0702 and DvMF_0703 are separated by 32 nucleotidesDvMF_0703 and DvMF_0704 are separated by 2 nucleotides DvMF_0701: DvMF_0701 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 849,817 to 851,454 _0701 DvMF_0702: DvMF_0702 - hypothetical protein (RefSeq), at 851,700 to 852,092 _0702 DvMF_0703: DvMF_0703 - protein of unknown function DUF81 (RefSeq), at 852,125 to 853,063 _0703 DvMF_0704: DvMF_0704 - hypothetical protein (RefSeq), at 853,066 to 853,830 _0704 Position (kb) 851 852 853Strain fitness (log2 ratio) -2 -1 0 1at 850.720 kb on + strand, within DvMF_0701at 850.875 kb on + strand, within DvMF_0701at 850.917 kb on + strand, within DvMF_0701at 851.120 kb on - strand, within DvMF_0701at 851.694 kb on - strandat 851.962 kb on + strand, within DvMF_0702at 852.006 kb on + strand, within DvMF_0702at 852.142 kb on - strandat 852.193 kb on - strandat 852.214 kb on + strandat 852.341 kb on - strand, within DvMF_0703at 852.686 kb on - strand, within DvMF_0703at 852.757 kb on + strand, within DvMF_0703at 852.795 kb on + strand, within DvMF_0703at 852.795 kb on + strand, within DvMF_0703at 852.813 kb on - strand, within DvMF_0703at 852.839 kb on + strand, within DvMF_0703

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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850,720 + DvMF_0701 0.55 -0.9
850,875 + DvMF_0701 0.65 -1.3
850,917 + DvMF_0701 0.67 +0.3
851,120 - DvMF_0701 0.80 +0.4
851,694 - -2.0
851,962 + DvMF_0702 0.67 -1.8
852,006 + DvMF_0702 0.78 +1.7
852,142 - -0.7
852,193 - -0.7
852,214 + -0.2
852,341 - DvMF_0703 0.23 -0.6
852,686 - DvMF_0703 0.60 -0.6
852,757 + DvMF_0703 0.67 +0.7
852,795 + DvMF_0703 0.71 -0.1
852,795 + DvMF_0703 0.71 -0.1
852,813 - DvMF_0703 0.73 -0.5
852,839 + DvMF_0703 0.76 -0.2

Or see this region's nucleotide sequence