Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0666

Experiment: 4 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0665 and DvMF_0666 overlap by 4 nucleotidesDvMF_0666 and DvMF_0667 overlap by 4 nucleotides DvMF_0665: DvMF_0665 - protein of unknown function DUF201 (RefSeq), at 802,777 to 803,937 _0665 DvMF_0666: DvMF_0666 - hypothetical protein (RefSeq), at 803,934 to 805,100 _0666 DvMF_0667: DvMF_0667 - hypothetical protein (RefSeq), at 805,097 to 806,107 _0667 Position (kb) 803 804 805 806Strain fitness (log2 ratio) -2 -1 0 1 2at 802.973 kb on - strand, within DvMF_0665at 803.172 kb on + strand, within DvMF_0665at 803.180 kb on - strand, within DvMF_0665at 803.180 kb on - strand, within DvMF_0665at 803.197 kb on - strand, within DvMF_0665at 803.522 kb on + strand, within DvMF_0665at 803.530 kb on - strand, within DvMF_0665at 803.796 kb on - strand, within DvMF_0665at 803.904 kb on - strandat 804.009 kb on - strandat 804.072 kb on - strand, within DvMF_0666at 804.870 kb on + strand, within DvMF_0666at 805.061 kb on + strandat 805.206 kb on - strand, within DvMF_0667at 805.346 kb on + strand, within DvMF_0667at 805.757 kb on + strand, within DvMF_0667at 805.763 kb on - strand, within DvMF_0667at 805.794 kb on + strand, within DvMF_0667at 805.814 kb on + strand, within DvMF_0667at 805.822 kb on - strand, within DvMF_0667at 805.822 kb on - strand, within DvMF_0667at 805.869 kb on + strand, within DvMF_0667

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 days starvation 37C
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802,973 - DvMF_0665 0.17 -0.5
803,172 + DvMF_0665 0.34 -1.2
803,180 - DvMF_0665 0.35 -1.3
803,180 - DvMF_0665 0.35 +2.2
803,197 - DvMF_0665 0.36 -1.2
803,522 + DvMF_0665 0.64 -0.8
803,530 - DvMF_0665 0.65 -0.9
803,796 - DvMF_0665 0.88 -0.9
803,904 - -0.3
804,009 - -0.1
804,072 - DvMF_0666 0.12 -0.0
804,870 + DvMF_0666 0.80 +1.9
805,061 + -1.0
805,206 - DvMF_0667 0.11 -0.8
805,346 + DvMF_0667 0.25 -0.4
805,757 + DvMF_0667 0.65 -0.2
805,763 - DvMF_0667 0.66 -0.7
805,794 + DvMF_0667 0.69 -0.7
805,814 + DvMF_0667 0.71 -2.1
805,822 - DvMF_0667 0.72 +0.5
805,822 - DvMF_0667 0.72 +0.6
805,869 + DvMF_0667 0.76 -0.1

Or see this region's nucleotide sequence