Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0567 and DvMF_0568 are separated by 196 nucleotides DvMF_0568 and DvMF_0569 are separated by 66 nucleotides DvMF_0569 and DvMF_0570 are separated by 374 nucleotides
DvMF_0567: DvMF_0567 - ATP-dependent chaperone ClpB (RefSeq), at 668,868 to 671,456
_0567
DvMF_0568: DvMF_0568 - hypothetical protein (RefSeq), at 671,653 to 672,003
_0568
DvMF_0569: DvMF_0569 - chaperone DnaJ domain protein (RefSeq), at 672,070 to 673,026
_0569
DvMF_0570: DvMF_0570 - polysaccharide deacetylase (RefSeq), at 673,401 to 674,552
_0570
Position (kb) 672
673
674 Strain fitness (log2 ratio) -2
-1
0
1
2 at 671.073 kb on + strand, within DvMF_0567 at 671.118 kb on - strand, within DvMF_0567 at 671.148 kb on - strand, within DvMF_0567 at 671.247 kb on + strand at 671.644 kb on + strand at 671.664 kb on + strand at 671.730 kb on + strand, within DvMF_0568 at 671.738 kb on - strand, within DvMF_0568 at 671.738 kb on - strand, within DvMF_0568 at 671.835 kb on + strand, within DvMF_0568 at 671.850 kb on + strand, within DvMF_0568 at 671.878 kb on + strand, within DvMF_0568 at 671.975 kb on - strand at 672.204 kb on - strand, within DvMF_0569 at 672.395 kb on - strand, within DvMF_0569 at 672.525 kb on + strand, within DvMF_0569 at 672.723 kb on + strand, within DvMF_0569 at 672.731 kb on - strand, within DvMF_0569 at 672.951 kb on + strand at 673.265 kb on - strand at 673.330 kb on - strand at 673.704 kb on + strand, within DvMF_0570 at 673.743 kb on - strand, within DvMF_0570 at 673.769 kb on - strand, within DvMF_0570
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 671,073 + DvMF_0567 0.85 -0.6 671,118 - DvMF_0567 0.87 -0.8 671,148 - DvMF_0567 0.88 -1.1 671,247 + -0.6 671,644 + +0.0 671,664 + -0.0 671,730 + DvMF_0568 0.22 -0.4 671,738 - DvMF_0568 0.24 -0.2 671,738 - DvMF_0568 0.24 +0.3 671,835 + DvMF_0568 0.52 -0.0 671,850 + DvMF_0568 0.56 +0.2 671,878 + DvMF_0568 0.64 +2.5 671,975 - +0.0 672,204 - DvMF_0569 0.14 -1.4 672,395 - DvMF_0569 0.34 -0.5 672,525 + DvMF_0569 0.48 -2.6 672,723 + DvMF_0569 0.68 -1.7 672,731 - DvMF_0569 0.69 -1.7 672,951 + -1.3 673,265 - -0.3 673,330 - -0.2 673,704 + DvMF_0570 0.26 -0.8 673,743 - DvMF_0570 0.30 +1.5 673,769 - DvMF_0570 0.32 +0.5
Or see this region's nucleotide sequence