Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0547 and DvMF_0548 are separated by 96 nucleotides DvMF_0548 and DvMF_0549 are separated by 136 nucleotides DvMF_0549 and DvMF_0550 are separated by 159 nucleotides
DvMF_0547: DvMF_0547 - putative carboxylesterase (RefSeq), at 644,939 to 645,748
_0547
DvMF_0548: DvMF_0548 - Guanine deaminase (RefSeq), at 645,845 to 647,167
_0548
DvMF_0549: DvMF_0549 - hypothetical protein (RefSeq), at 647,304 to 647,579
_0549
DvMF_0550: DvMF_0550 - diaminopimelate aminotransferase (RefSeq), at 647,739 to 648,968
_0550
Position (kb) 645
646
647
648 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 645.050 kb on - strand, within DvMF_0547 at 645.099 kb on + strand, within DvMF_0547 at 645.172 kb on - strand, within DvMF_0547 at 645.196 kb on + strand, within DvMF_0547 at 645.287 kb on + strand, within DvMF_0547 at 645.288 kb on - strand, within DvMF_0547 at 645.430 kb on + strand, within DvMF_0547 at 645.512 kb on - strand, within DvMF_0547 at 645.558 kb on + strand, within DvMF_0547 at 645.749 kb on + strand at 645.853 kb on + strand at 645.872 kb on - strand at 645.981 kb on - strand, within DvMF_0548 at 646.064 kb on + strand, within DvMF_0548 at 646.064 kb on + strand, within DvMF_0548 at 646.064 kb on + strand, within DvMF_0548 at 646.072 kb on - strand, within DvMF_0548 at 646.178 kb on + strand, within DvMF_0548 at 646.402 kb on + strand, within DvMF_0548 at 646.429 kb on - strand, within DvMF_0548 at 646.429 kb on - strand, within DvMF_0548 at 646.431 kb on - strand, within DvMF_0548 at 646.661 kb on + strand, within DvMF_0548 at 646.836 kb on + strand, within DvMF_0548 at 646.914 kb on - strand, within DvMF_0548 at 646.949 kb on + strand, within DvMF_0548 at 647.108 kb on + strand at 647.111 kb on - strand at 648.067 kb on - strand, within DvMF_0550 at 648.111 kb on - strand, within DvMF_0550
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 645,050 - DvMF_0547 0.14 -0.9 645,099 + DvMF_0547 0.20 -3.8 645,172 - DvMF_0547 0.29 -2.9 645,196 + DvMF_0547 0.32 -1.2 645,287 + DvMF_0547 0.43 -2.7 645,288 - DvMF_0547 0.43 -2.3 645,430 + DvMF_0547 0.61 -1.6 645,512 - DvMF_0547 0.71 -1.5 645,558 + DvMF_0547 0.76 +0.2 645,749 + -2.9 645,853 + -1.1 645,872 - -0.6 645,981 - DvMF_0548 0.10 -1.7 646,064 + DvMF_0548 0.17 -0.3 646,064 + DvMF_0548 0.17 -0.8 646,064 + DvMF_0548 0.17 -0.3 646,072 - DvMF_0548 0.17 +0.0 646,178 + DvMF_0548 0.25 -1.0 646,402 + DvMF_0548 0.42 -2.3 646,429 - DvMF_0548 0.44 -0.6 646,429 - DvMF_0548 0.44 -1.1 646,431 - DvMF_0548 0.44 -0.5 646,661 + DvMF_0548 0.62 -1.1 646,836 + DvMF_0548 0.75 -0.6 646,914 - DvMF_0548 0.81 -0.0 646,949 + DvMF_0548 0.83 -0.8 647,108 + -1.0 647,111 - -0.7 648,067 - DvMF_0550 0.27 -0.8 648,111 - DvMF_0550 0.30 -1.3
Or see this region's nucleotide sequence