Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0508 and DvMF_0509 are separated by 350 nucleotides DvMF_0509 and DvMF_0510 are separated by 162 nucleotides DvMF_0510 and DvMF_0511 are separated by 146 nucleotides
DvMF_0508: DvMF_0508 - glycosyl transferase group 1 (RefSeq), at 596,995 to 598,908
_0508
DvMF_0509: DvMF_0509 - diguanylate cyclase (RefSeq), at 599,259 to 600,755
_0509
DvMF_0510: DvMF_0510 - C_GCAxxG_C_C family protein (RefSeq), at 600,918 to 601,412
_0510
DvMF_0511: DvMF_0511 - transcriptional regulator, LysR family (RefSeq), at 601,559 to 603,658
_0511
Position (kb)
599
600
601 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 598.267 kb on - strand, within DvMF_0508 at 598.267 kb on - strand, within DvMF_0508 at 598.358 kb on + strand, within DvMF_0508 at 598.358 kb on + strand, within DvMF_0508 at 598.358 kb on + strand, within DvMF_0508 at 598.421 kb on - strand, within DvMF_0508 at 598.484 kb on + strand, within DvMF_0508 at 598.570 kb on - strand, within DvMF_0508 at 598.628 kb on + strand, within DvMF_0508 at 598.770 kb on - strand at 598.787 kb on - strand at 598.792 kb on - strand at 599.081 kb on - strand at 599.096 kb on - strand at 599.121 kb on - strand at 599.259 kb on + strand at 599.351 kb on - strand at 599.760 kb on - strand, within DvMF_0509 at 600.246 kb on + strand, within DvMF_0509 at 600.357 kb on - strand, within DvMF_0509 at 600.359 kb on + strand, within DvMF_0509 at 600.367 kb on - strand, within DvMF_0509 at 600.594 kb on + strand, within DvMF_0509 at 600.641 kb on - strand at 600.848 kb on + strand at 600.866 kb on - strand at 600.893 kb on + strand at 600.911 kb on + strand at 600.924 kb on - strand at 601.227 kb on + strand, within DvMF_0510 at 601.267 kb on - strand, within DvMF_0510 at 601.574 kb on + strand at 601.582 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 598,267 - DvMF_0508 0.66 -0.7 598,267 - DvMF_0508 0.66 -0.5 598,358 + DvMF_0508 0.71 -2.1 598,358 + DvMF_0508 0.71 -0.2 598,358 + DvMF_0508 0.71 -0.7 598,421 - DvMF_0508 0.75 -0.3 598,484 + DvMF_0508 0.78 -1.4 598,570 - DvMF_0508 0.82 -0.5 598,628 + DvMF_0508 0.85 -0.1 598,770 - +0.5 598,787 - -0.6 598,792 - -0.2 599,081 - +0.3 599,096 - -0.3 599,121 - -0.2 599,259 + -0.6 599,351 - -0.6 599,760 - DvMF_0509 0.33 -0.1 600,246 + DvMF_0509 0.66 -0.6 600,357 - DvMF_0509 0.73 -0.6 600,359 + DvMF_0509 0.73 -0.7 600,367 - DvMF_0509 0.74 -1.7 600,594 + DvMF_0509 0.89 -1.2 600,641 - -1.3 600,848 + -0.5 600,866 - -0.7 600,893 + +0.5 600,911 + +0.5 600,924 - -0.8 601,227 + DvMF_0510 0.62 -3.0 601,267 - DvMF_0510 0.71 +0.5 601,574 + -0.4 601,582 - -0.6
Or see this region's nucleotide sequence