Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0285 and DvMF_0286 are separated by 110 nucleotides DvMF_0286 and DvMF_0287 are separated by 405 nucleotides
DvMF_0285: DvMF_0285 - transcription-repair coupling factor (RefSeq), at 325,508 to 329,101
_0285
DvMF_0286: DvMF_0286 - hypothetical protein (RefSeq), at 329,212 to 330,459
_0286
DvMF_0287: DvMF_0287 - SurA domain protein (RefSeq), at 330,865 to 331,827
_0287
Position (kb) 329
330
331 Strain fitness (log2 ratio) -1
0
1 at 328.269 kb on - strand, within DvMF_0285 at 328.286 kb on + strand, within DvMF_0285 at 328.351 kb on + strand, within DvMF_0285 at 328.378 kb on - strand, within DvMF_0285 at 328.397 kb on - strand, within DvMF_0285 at 328.450 kb on + strand, within DvMF_0285 at 328.524 kb on + strand, within DvMF_0285 at 328.548 kb on + strand, within DvMF_0285 at 328.587 kb on - strand, within DvMF_0285 at 329.101 kb on + strand at 329.104 kb on - strand at 329.165 kb on - strand at 329.366 kb on - strand, within DvMF_0286 at 329.368 kb on - strand, within DvMF_0286 at 329.394 kb on - strand, within DvMF_0286 at 329.400 kb on - strand, within DvMF_0286 at 329.697 kb on + strand, within DvMF_0286 at 329.715 kb on + strand, within DvMF_0286 at 329.767 kb on + strand, within DvMF_0286 at 330.118 kb on + strand, within DvMF_0286 at 330.157 kb on - strand, within DvMF_0286 at 330.191 kb on - strand, within DvMF_0286 at 330.281 kb on - strand, within DvMF_0286 at 330.300 kb on - strand, within DvMF_0286 at 330.534 kb on + strand at 330.668 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 328,269 - DvMF_0285 0.77 -1.0 328,286 + DvMF_0285 0.77 +0.1 328,351 + DvMF_0285 0.79 -0.5 328,378 - DvMF_0285 0.80 -1.3 328,397 - DvMF_0285 0.80 +1.0 328,450 + DvMF_0285 0.82 -0.5 328,524 + DvMF_0285 0.84 -0.7 328,548 + DvMF_0285 0.85 -0.6 328,587 - DvMF_0285 0.86 -0.9 329,101 + +0.1 329,104 - +0.0 329,165 - -0.2 329,366 - DvMF_0286 0.12 -0.3 329,368 - DvMF_0286 0.12 +0.5 329,394 - DvMF_0286 0.15 -1.0 329,400 - DvMF_0286 0.15 -0.1 329,697 + DvMF_0286 0.39 +0.0 329,715 + DvMF_0286 0.40 -0.9 329,767 + DvMF_0286 0.44 +0.0 330,118 + DvMF_0286 0.73 -0.1 330,157 - DvMF_0286 0.76 -0.1 330,191 - DvMF_0286 0.78 -0.2 330,281 - DvMF_0286 0.86 -0.5 330,300 - DvMF_0286 0.87 -1.3 330,534 + -0.3 330,668 - +0.0
Or see this region's nucleotide sequence