Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0284 and DvMF_0285 are separated by 347 nucleotides DvMF_0285 and DvMF_0286 are separated by 110 nucleotides
DvMF_0284: DvMF_0284 - CheW protein (RefSeq), at 324,684 to 325,160
_0284
DvMF_0285: DvMF_0285 - transcription-repair coupling factor (RefSeq), at 325,508 to 329,101
_0285
DvMF_0286: DvMF_0286 - hypothetical protein (RefSeq), at 329,212 to 330,459
_0286
Position (kb) 325
326
327
328
329
330 Strain fitness (log2 ratio) -1
0
1 at 324.563 kb on - strand at 325.234 kb on + strand at 325.266 kb on + strand at 325.278 kb on + strand at 325.337 kb on - strand at 325.584 kb on + strand at 325.705 kb on + strand at 326.065 kb on - strand, within DvMF_0285 at 326.210 kb on - strand, within DvMF_0285 at 326.234 kb on - strand, within DvMF_0285 at 326.516 kb on + strand, within DvMF_0285 at 326.565 kb on + strand, within DvMF_0285 at 326.758 kb on + strand, within DvMF_0285 at 326.809 kb on - strand, within DvMF_0285 at 326.945 kb on + strand, within DvMF_0285 at 327.035 kb on - strand, within DvMF_0285 at 327.217 kb on + strand, within DvMF_0285 at 327.235 kb on - strand, within DvMF_0285 at 327.394 kb on - strand, within DvMF_0285 at 327.418 kb on - strand, within DvMF_0285 at 327.442 kb on - strand, within DvMF_0285 at 327.544 kb on - strand, within DvMF_0285 at 327.709 kb on + strand, within DvMF_0285 at 327.874 kb on - strand, within DvMF_0285 at 327.909 kb on + strand, within DvMF_0285 at 327.985 kb on - strand, within DvMF_0285 at 327.994 kb on + strand, within DvMF_0285 at 328.060 kb on - strand, within DvMF_0285 at 328.075 kb on - strand, within DvMF_0285 at 328.269 kb on - strand, within DvMF_0285 at 328.286 kb on + strand, within DvMF_0285 at 328.351 kb on + strand, within DvMF_0285 at 328.378 kb on - strand, within DvMF_0285 at 328.397 kb on - strand, within DvMF_0285 at 328.450 kb on + strand, within DvMF_0285 at 328.524 kb on + strand, within DvMF_0285 at 328.548 kb on + strand, within DvMF_0285 at 328.587 kb on - strand, within DvMF_0285 at 329.101 kb on + strand at 329.104 kb on - strand at 329.165 kb on - strand at 329.366 kb on - strand, within DvMF_0286 at 329.368 kb on - strand, within DvMF_0286 at 329.394 kb on - strand, within DvMF_0286 at 329.400 kb on - strand, within DvMF_0286 at 329.697 kb on + strand, within DvMF_0286 at 329.715 kb on + strand, within DvMF_0286 at 329.767 kb on + strand, within DvMF_0286
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 324,563 - -0.7 325,234 + -0.7 325,266 + -0.1 325,278 + +0.1 325,337 - -0.2 325,584 + -0.1 325,705 + -0.2 326,065 - DvMF_0285 0.15 -0.1 326,210 - DvMF_0285 0.20 -0.7 326,234 - DvMF_0285 0.20 -0.2 326,516 + DvMF_0285 0.28 +0.6 326,565 + DvMF_0285 0.29 +1.6 326,758 + DvMF_0285 0.35 -0.1 326,809 - DvMF_0285 0.36 +0.6 326,945 + DvMF_0285 0.40 -0.5 327,035 - DvMF_0285 0.42 +0.4 327,217 + DvMF_0285 0.48 -0.3 327,235 - DvMF_0285 0.48 +0.2 327,394 - DvMF_0285 0.52 -0.2 327,418 - DvMF_0285 0.53 -0.2 327,442 - DvMF_0285 0.54 +0.8 327,544 - DvMF_0285 0.57 -0.4 327,709 + DvMF_0285 0.61 +0.0 327,874 - DvMF_0285 0.66 -0.8 327,909 + DvMF_0285 0.67 +1.5 327,985 - DvMF_0285 0.69 -0.7 327,994 + DvMF_0285 0.69 -0.1 328,060 - DvMF_0285 0.71 -0.4 328,075 - DvMF_0285 0.71 +0.7 328,269 - DvMF_0285 0.77 -1.0 328,286 + DvMF_0285 0.77 +0.1 328,351 + DvMF_0285 0.79 -0.5 328,378 - DvMF_0285 0.80 -1.3 328,397 - DvMF_0285 0.80 +1.0 328,450 + DvMF_0285 0.82 -0.5 328,524 + DvMF_0285 0.84 -0.7 328,548 + DvMF_0285 0.85 -0.6 328,587 - DvMF_0285 0.86 -0.9 329,101 + +0.1 329,104 - +0.0 329,165 - -0.2 329,366 - DvMF_0286 0.12 -0.3 329,368 - DvMF_0286 0.12 +0.5 329,394 - DvMF_0286 0.15 -1.0 329,400 - DvMF_0286 0.15 -0.1 329,697 + DvMF_0286 0.39 +0.0 329,715 + DvMF_0286 0.40 -0.9 329,767 + DvMF_0286 0.44 +0.0
Or see this region's nucleotide sequence