Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0259 and DvMF_R0015 are separated by 190 nucleotides DvMF_R0015 and DvMF_0260 are separated by 120 nucleotides DvMF_0260 and DvMF_0261 are separated by 279 nucleotides
DvMF_0259: DvMF_0259 - protein of unknown function DUF34 (RefSeq), at 296,363 to 297,397
_0259
DvMF_R0015: DvMF_R0015 - tRNA-Met (RefSeq), at 297,588 to 297,663
_R0015
DvMF_0260: DvMF_0260 - Thioredoxin-disulfide reductase (RefSeq), at 297,784 to 298,740
_0260
DvMF_0261: DvMF_0261 - putative chemotaxis phosphatase, CheZ (RefSeq), at 299,020 to 299,766
_0261
Position (kb) 297
298
299 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 297.092 kb on - strand, within DvMF_0259 at 297.118 kb on + strand, within DvMF_0259 at 297.441 kb on + strand at 297.485 kb on - strand at 297.832 kb on + strand at 297.837 kb on + strand at 297.840 kb on - strand at 297.965 kb on + strand, within DvMF_0260 at 298.159 kb on + strand, within DvMF_0260 at 298.159 kb on + strand, within DvMF_0260 at 298.178 kb on - strand, within DvMF_0260 at 298.242 kb on + strand, within DvMF_0260 at 298.768 kb on + strand at 299.150 kb on - strand, within DvMF_0261 at 299.212 kb on + strand, within DvMF_0261 at 299.212 kb on + strand, within DvMF_0261 at 299.311 kb on + strand, within DvMF_0261 at 299.406 kb on + strand, within DvMF_0261 at 299.518 kb on - strand, within DvMF_0261
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 297,092 - DvMF_0259 0.70 -3.0 297,118 + DvMF_0259 0.73 -3.7 297,441 + -0.7 297,485 - +0.1 297,832 + -1.0 297,837 + -0.6 297,840 - -0.9 297,965 + DvMF_0260 0.19 -1.4 298,159 + DvMF_0260 0.39 -1.6 298,159 + DvMF_0260 0.39 -0.4 298,178 - DvMF_0260 0.41 -0.6 298,242 + DvMF_0260 0.48 -0.5 298,768 + -0.3 299,150 - DvMF_0261 0.17 -0.3 299,212 + DvMF_0261 0.26 -0.3 299,212 + DvMF_0261 0.26 -1.2 299,311 + DvMF_0261 0.39 +0.7 299,406 + DvMF_0261 0.52 -0.9 299,518 - DvMF_0261 0.67 -0.4
Or see this region's nucleotide sequence