Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0179 and DvMF_0180 are separated by 267 nucleotides DvMF_0180 and DvMF_R0010 are separated by 304 nucleotides DvMF_R0010 and DvMF_R0011 are separated by 77 nucleotides DvMF_R0011 and DvMF_R0012 are separated by 61 nucleotides
DvMF_0179: DvMF_0179 - hypothetical protein (RefSeq), at 195,652 to 196,503
_0179
DvMF_0180: DvMF_0180 - hypothetical protein (RefSeq), at 196,771 to 197,655
_0180
DvMF_R0010: DvMF_R0010 - tRNA-Arg (RefSeq), at 197,960 to 198,036
_R0010
DvMF_R0011: DvMF_R0011 - tRNA-Arg (RefSeq), at 198,114 to 198,190
_R0011
DvMF_R0012: DvMF_R0012 - tRNA-Arg (RefSeq), at 198,252 to 198,328
_R0012
Position (kb) 196
197
198 Strain fitness (log2 ratio) -1
0
1 at 195.871 kb on + strand, within DvMF_0179 at 196.162 kb on - strand, within DvMF_0179 at 196.177 kb on + strand, within DvMF_0179 at 196.185 kb on - strand, within DvMF_0179 at 196.492 kb on + strand at 196.547 kb on + strand at 196.692 kb on + strand at 196.700 kb on - strand at 196.790 kb on + strand at 196.798 kb on - strand at 196.915 kb on - strand, within DvMF_0180 at 196.920 kb on - strand, within DvMF_0180 at 197.269 kb on + strand, within DvMF_0180 at 197.454 kb on + strand, within DvMF_0180 at 197.472 kb on - strand, within DvMF_0180 at 197.472 kb on - strand, within DvMF_0180 at 197.518 kb on + strand, within DvMF_0180 at 197.518 kb on + strand, within DvMF_0180 at 197.718 kb on - strand at 198.531 kb on - strand at 198.578 kb on + strand at 198.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 195,871 + DvMF_0179 0.26 -0.7 196,162 - DvMF_0179 0.60 +0.8 196,177 + DvMF_0179 0.62 -0.6 196,185 - DvMF_0179 0.63 -0.2 196,492 + -0.5 196,547 + -1.1 196,692 + -0.8 196,700 - +0.3 196,790 + -0.8 196,798 - -0.2 196,915 - DvMF_0180 0.16 -0.5 196,920 - DvMF_0180 0.17 -0.9 197,269 + DvMF_0180 0.56 -0.3 197,454 + DvMF_0180 0.77 -0.7 197,472 - DvMF_0180 0.79 -1.3 197,472 - DvMF_0180 0.79 -0.9 197,518 + DvMF_0180 0.84 -0.6 197,518 + DvMF_0180 0.84 -0.7 197,718 - -0.5 198,531 - -0.5 198,578 + -1.6 198,579 - +1.1
Or see this region's nucleotide sequence