Experiment: 4 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0107 and DvMF_0108 overlap by 4 nucleotides DvMF_0108 and DvMF_R0008 are separated by 325 nucleotides DvMF_R0008 and DvMF_0109 are separated by 80 nucleotides
DvMF_0107: DvMF_0107 - selenide, water dikinase (RefSeq), at 115,303 to 116,355
_0107
DvMF_0108: DvMF_0108 - transcriptional regulator, LysR family (RefSeq), at 116,352 to 117,314
_0108
DvMF_R0008: DvMF_R0008 - tRNA-Leu (RefSeq), at 117,640 to 117,724
_R0008
DvMF_0109: DvMF_0109 - trigger factor (RefSeq), at 117,805 to 119,103
_0109
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 115.611 kb on - strand, within DvMF_0107 at 115.622 kb on - strand, within DvMF_0107 at 115.752 kb on + strand, within DvMF_0107 at 116.228 kb on + strand, within DvMF_0107 at 116.237 kb on - strand, within DvMF_0107 at 116.290 kb on + strand at 116.321 kb on + strand at 116.428 kb on - strand at 116.462 kb on - strand, within DvMF_0108 at 116.624 kb on - strand, within DvMF_0108 at 116.929 kb on - strand, within DvMF_0108 at 116.964 kb on + strand, within DvMF_0108 at 117.101 kb on + strand, within DvMF_0108 at 117.101 kb on + strand, within DvMF_0108 at 117.144 kb on - strand, within DvMF_0108 at 117.242 kb on - strand at 117.410 kb on + strand at 117.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4 days starvation 37C remove 115,611 - DvMF_0107 0.29 -0.7 115,622 - DvMF_0107 0.30 -0.7 115,752 + DvMF_0107 0.43 -1.5 116,228 + DvMF_0107 0.88 -1.0 116,237 - DvMF_0107 0.89 -0.3 116,290 + +3.1 116,321 + -0.7 116,428 - -0.9 116,462 - DvMF_0108 0.11 -0.9 116,624 - DvMF_0108 0.28 -0.2 116,929 - DvMF_0108 0.60 -1.8 116,964 + DvMF_0108 0.64 -1.5 117,101 + DvMF_0108 0.78 -0.6 117,101 + DvMF_0108 0.78 -1.1 117,144 - DvMF_0108 0.82 -0.7 117,242 - -1.4 117,410 + -0.3 117,508 - -0.0
Or see this region's nucleotide sequence