Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2240 and Shew_2241 are separated by 102 nucleotides Shew_2241 and Shew_2242 are separated by 441 nucleotides Shew_2242 and Shew_2243 are separated by 252 nucleotides Shew_2243 and Shew_2244 are separated by 221 nucleotides
Shew_2240: Shew_2240 - hypothetical protein (RefSeq), at 2,617,717 to 2,618,553
_2240
Shew_2241: Shew_2241 - hypothetical protein (RefSeq), at 2,618,656 to 2,619,096
_2241
Shew_2242: Shew_2242 - dihydrouridine synthase, DuS (RefSeq), at 2,619,538 to 2,620,467
_2242
Shew_2243: Shew_2243 - TraR/DksA family transcriptional regulator (RefSeq), at 2,620,720 to 2,621,076
_2243
Shew_2244: Shew_2244 - TonB-dependent receptor (RefSeq), at 2,621,298 to 2,623,976
_2244
Position (kb)
2619
2620
2621 Strain fitness (log2 ratio)
-1
0
1 at 2618.542 kb on - strand at 2618.621 kb on + strand at 2618.810 kb on + strand, within Shew_2241 at 2619.013 kb on + strand, within Shew_2241 at 2619.063 kb on - strand at 2619.148 kb on - strand at 2619.361 kb on - strand at 2619.376 kb on - strand at 2619.395 kb on - strand at 2619.441 kb on - strand at 2619.933 kb on + strand, within Shew_2242 at 2620.036 kb on + strand, within Shew_2242 at 2620.237 kb on - strand, within Shew_2242 at 2620.274 kb on - strand, within Shew_2242 at 2620.991 kb on + strand, within Shew_2243 at 2621.018 kb on - strand, within Shew_2243 at 2621.085 kb on - strand at 2621.433 kb on + strand at 2621.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,618,542 - -0.0 2,618,621 + +0.1 2,618,810 + Shew_2241 0.35 -0.1 2,619,013 + Shew_2241 0.81 -1.1 2,619,063 - +0.3 2,619,148 - -0.1 2,619,361 - +0.4 2,619,376 - +0.0 2,619,395 - +0.2 2,619,441 - +0.0 2,619,933 + Shew_2242 0.42 +0.3 2,620,036 + Shew_2242 0.54 +0.1 2,620,237 - Shew_2242 0.75 +0.4 2,620,274 - Shew_2242 0.79 +0.8 2,620,991 + Shew_2243 0.76 -1.6 2,621,018 - Shew_2243 0.83 +0.5 2,621,085 - +0.2 2,621,433 + -0.0 2,621,463 - -0.1
Or see this region's nucleotide sequence