Strain Fitness in Shewanella loihica PV-4 around Shew_1712

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1711 and Shew_1712 are separated by 151 nucleotidesShew_1712 and Shew_1713 are separated by 310 nucleotides Shew_1711: Shew_1711 - methyl-accepting chemotaxis protein (RefSeq), at 1,963,016 to 1,964,173 _1711 Shew_1712: Shew_1712 - hypothetical protein (RefSeq), at 1,964,325 to 1,965,611 _1712 Shew_1713: Shew_1713 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 1,965,922 to 1,966,971 _1713 Position (kb) 1964 1965 1966Strain fitness (log2 ratio) -2 -1 0 1at 1964.050 kb on + strand, within Shew_1711at 1964.475 kb on + strand, within Shew_1712at 1964.659 kb on + strand, within Shew_1712at 1964.770 kb on + strand, within Shew_1712at 1965.425 kb on - strand, within Shew_1712at 1965.507 kb on + strandat 1966.141 kb on - strand, within Shew_1713at 1966.434 kb on + strand, within Shew_1713

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,964,050 + Shew_1711 0.89 +0.2
1,964,475 + Shew_1712 0.12 -0.7
1,964,659 + Shew_1712 0.26 +0.4
1,964,770 + Shew_1712 0.35 -1.9
1,965,425 - Shew_1712 0.85 -0.2
1,965,507 + -0.1
1,966,141 - Shew_1713 0.21 +1.2
1,966,434 + Shew_1713 0.49 +1.1

Or see this region's nucleotide sequence