Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0320 and Shew_0321 are separated by 489 nucleotides Shew_0321 and Shew_0322 are separated by 5 nucleotides Shew_0322 and dapF are separated by 37 nucleotides dapF and Shew_0324 are separated by 8 nucleotides
Shew_0320: Shew_0320 - frataxin family protein (RefSeq), at 367,230 to 367,604
_0320
Shew_0321: Shew_0321 - hypothetical protein (RefSeq), at 368,094 to 368,261
_0321
Shew_0322: Shew_0322 - diaminopimelate decarboxylase (RefSeq), at 368,267 to 369,511
_0322
Shew_0323: dapF - diaminopimelate epimerase (RefSeq), at 369,549 to 370,388
dapF
Shew_0324: Shew_0324 - hypothetical protein (RefSeq), at 370,397 to 371,023
_0324
Position (kb) 368
369
370 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 367.270 kb on - strand, within Shew_0320 at 367.270 kb on - strand, within Shew_0320 at 367.270 kb on - strand, within Shew_0320 at 367.313 kb on - strand, within Shew_0320 at 367.413 kb on - strand, within Shew_0320 at 368.416 kb on - strand, within Shew_0322 at 368.423 kb on + strand, within Shew_0322 at 368.449 kb on - strand, within Shew_0322 at 368.451 kb on + strand, within Shew_0322 at 368.459 kb on - strand, within Shew_0322 at 368.459 kb on - strand, within Shew_0322 at 368.723 kb on + strand, within Shew_0322 at 369.262 kb on - strand, within Shew_0322 at 369.403 kb on - strand at 369.505 kb on + strand at 369.505 kb on + strand at 370.489 kb on + strand, within Shew_0324
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 367,270 - Shew_0320 0.11 -0.4 367,270 - Shew_0320 0.11 -2.8 367,270 - Shew_0320 0.11 +0.0 367,313 - Shew_0320 0.22 +0.1 367,413 - Shew_0320 0.49 -0.0 368,416 - Shew_0322 0.12 -2.3 368,423 + Shew_0322 0.13 -0.2 368,449 - Shew_0322 0.15 -0.4 368,451 + Shew_0322 0.15 -0.1 368,459 - Shew_0322 0.15 -3.2 368,459 - Shew_0322 0.15 -3.2 368,723 + Shew_0322 0.37 -0.0 369,262 - Shew_0322 0.80 -0.6 369,403 - -0.4 369,505 + +0.2 369,505 + -0.0 370,489 + Shew_0324 0.15 -0.9
Or see this region's nucleotide sequence