Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2632

Experiment: m.b. copper (II) chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2631 and Dshi_2632 are separated by 166 nucleotidesDshi_2632 and Dshi_2633 are separated by 50 nucleotides Dshi_2631: Dshi_2631 - response regulator receiver protein (RefSeq), at 2,787,540 to 2,788,244 _2631 Dshi_2632: Dshi_2632 - hypothetical protein (RefSeq), at 2,788,411 to 2,788,605 _2632 Dshi_2633: Dshi_2633 - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data), at 2,788,656 to 2,790,428 _2633 Position (kb) 2788 2789Strain fitness (log2 ratio) -1 0 1 2at 2787.425 kb on - strandat 2787.451 kb on + strandat 2787.544 kb on - strandat 2787.765 kb on - strand, within Dshi_2631at 2787.863 kb on + strand, within Dshi_2631at 2787.920 kb on + strand, within Dshi_2631at 2788.019 kb on - strand, within Dshi_2631at 2788.036 kb on - strand, within Dshi_2631at 2788.066 kb on + strand, within Dshi_2631at 2788.093 kb on - strand, within Dshi_2631at 2788.385 kb on + strandat 2788.553 kb on + strand, within Dshi_2632at 2788.578 kb on + strand, within Dshi_2632

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.32 mM
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2,787,425 - -0.5
2,787,451 + +0.2
2,787,544 - +1.0
2,787,765 - Dshi_2631 0.32 -0.3
2,787,863 + Dshi_2631 0.46 -0.1
2,787,920 + Dshi_2631 0.54 +0.8
2,788,019 - Dshi_2631 0.68 +1.8
2,788,036 - Dshi_2631 0.70 -0.1
2,788,066 + Dshi_2631 0.75 +0.2
2,788,093 - Dshi_2631 0.78 +1.2
2,788,385 + -0.4
2,788,553 + Dshi_2632 0.73 -0.9
2,788,578 + Dshi_2632 0.86 -0.4

Or see this region's nucleotide sequence