Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2388

Experiment: m.b. copper (II) chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2387 and Dshi_2388 are separated by 79 nucleotidesDshi_2388 and Dshi_2389 are separated by 12 nucleotidesDshi_2389 and Dshi_2390 are separated by 92 nucleotides Dshi_2387: Dshi_2387 - carbamoyl-phosphate synthase, small subunit (RefSeq), at 2,520,801 to 2,521,970 _2387 Dshi_2388: Dshi_2388 - glycosyl transferase family 2 (RefSeq), at 2,522,050 to 2,523,957 _2388 Dshi_2389: Dshi_2389 - transcriptional regulator, GntR family (RefSeq), at 2,523,970 to 2,524,611 _2389 Dshi_2390: Dshi_2390 - pyrimidine 5'-nucleotidase (RefSeq), at 2,524,704 to 2,525,351 _2390 Position (kb) 2522 2523 2524Strain fitness (log2 ratio) -2 -1 0 1 2at 2522.410 kb on - strand, within Dshi_2388at 2522.430 kb on + strand, within Dshi_2388at 2522.552 kb on + strand, within Dshi_2388at 2522.603 kb on + strand, within Dshi_2388at 2522.653 kb on - strand, within Dshi_2388at 2522.749 kb on - strand, within Dshi_2388at 2522.851 kb on + strand, within Dshi_2388at 2522.920 kb on - strand, within Dshi_2388at 2522.949 kb on + strand, within Dshi_2388at 2523.042 kb on - strand, within Dshi_2388at 2523.080 kb on - strand, within Dshi_2388at 2523.141 kb on - strand, within Dshi_2388at 2523.167 kb on + strand, within Dshi_2388at 2523.215 kb on + strand, within Dshi_2388at 2523.270 kb on + strand, within Dshi_2388at 2523.368 kb on - strand, within Dshi_2388at 2523.371 kb on + strand, within Dshi_2388at 2523.507 kb on + strand, within Dshi_2388at 2523.656 kb on - strand, within Dshi_2388at 2523.883 kb on + strandat 2524.167 kb on + strand, within Dshi_2389at 2524.264 kb on - strand, within Dshi_2389at 2524.264 kb on - strand, within Dshi_2389at 2524.284 kb on - strand, within Dshi_2389at 2524.603 kb on - strandat 2524.735 kb on - strandat 2524.872 kb on + strand, within Dshi_2390

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.32 mM
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2,522,410 - Dshi_2388 0.19 -0.3
2,522,430 + Dshi_2388 0.20 -0.0
2,522,552 + Dshi_2388 0.26 -0.1
2,522,603 + Dshi_2388 0.29 -1.0
2,522,653 - Dshi_2388 0.32 -0.1
2,522,749 - Dshi_2388 0.37 -0.1
2,522,851 + Dshi_2388 0.42 +1.3
2,522,920 - Dshi_2388 0.46 +0.7
2,522,949 + Dshi_2388 0.47 -0.6
2,523,042 - Dshi_2388 0.52 -1.9
2,523,080 - Dshi_2388 0.54 -0.5
2,523,141 - Dshi_2388 0.57 -0.3
2,523,167 + Dshi_2388 0.59 -0.7
2,523,215 + Dshi_2388 0.61 +0.3
2,523,270 + Dshi_2388 0.64 +0.4
2,523,368 - Dshi_2388 0.69 -0.3
2,523,371 + Dshi_2388 0.69 +0.1
2,523,507 + Dshi_2388 0.76 -0.3
2,523,656 - Dshi_2388 0.84 -0.2
2,523,883 + +0.7
2,524,167 + Dshi_2389 0.31 +0.5
2,524,264 - Dshi_2389 0.46 -0.8
2,524,264 - Dshi_2389 0.46 -1.3
2,524,284 - Dshi_2389 0.49 +2.1
2,524,603 - -1.0
2,524,735 - +0.4
2,524,872 + Dshi_2390 0.26 +0.3

Or see this region's nucleotide sequence